Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02611 ATGGCGATGCAAACTGTTTATCTGAAAGAACATGAAGGAAATGCCGCGAATTTTGTGGGGGCCTTGTCATCTGCAGGTTCAGGACCCTGGTGGGGTGGTTTTGGATCTCAAGGTGTTCGGGGTGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTTCCGAACTGCATAAACCATCATGCTGCCAATAAGCCTTCTGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACACACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAAACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCTCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTAGGCAGTCCCGTGCCAAAGCTGTACTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGAGGTCGCTTCTTGAACACCAGGAAATCTGGTAATGGAAATGGCAAAACTGACAATGAAGTGCATGAAACTGTTGGTGAACAATTTCATTCCGGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAGGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTTGTAGACATGATAGATGGTGGGCGTGGAATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGAAACTGCTGCAACCTTAAAGTCTGA 978 0.4489 MAMQTVYLKEHEGNAANFVGALSSAGSGPWWGGFGSQGVHXGESCGQMKPFSLELPNCINHHAANKPSARGAEQVLGKGHTTQFTIFPDDCKMSDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSGNGNGKTDNEVHETVGEQFHSGGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSHRFSLNHFGSSVHTLVDMIDGGRGMIIPPKWAAAAGNCCNLKV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02611 326 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Viun1g02611 326 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Viun1g02611 326 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Viun1g02611 326 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Viun1g02611 326 Gene3D - 160 222 - -
Viun1g02611 326 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 75 283 IPR001289 GO:0003700|GO:0006355
Viun1g02611 326 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Viun1g02611 326 MobiDBLite consensus disorder prediction 241 277 - -
Viun1g02611 326 MobiDBLite consensus disorder prediction 209 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02611 Viun-Chr1 36203993 36207716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02611 1 326 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.442 5.21e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Viun1g02611 CBFB_NFYA 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02611 K08064 - gmx:100815382 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02611 1 36203993 36207716 Viun7g00205 7 1469656 1473697 PCT