Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02610 ATGGCTGCTGCAGCTTCTTTTTCCTCTTCTATCTGCAACAGAATATACAACCTTTCCCTCACCCACTCTTCCATTTCACGCACCTCCAACTTCCCTCAGAGACCCATTTTCCAAAAACCACTCAATCTTAACCACAAGTCCCAAAATTTCAGTCTTTCATTTCTCCCACTTCATCGTCTGTCCCCACCGTCCGCCACCTTCGATGGGTCGGAAGTGGGTCAAGACATCACAGAGTCCCGACAAGACGAACCGGTAACAGAAACCTCTGAAAAAACAGAACAAGAGGCAGAGCAAAAGGTTTCAGACTCGAACGATAACGAGGCCGGGAGGCTCTATATTGGAAACTTGCCATATTCAATTACTAATTCCCAATTGGAAGAGCTCTTTGGAGAAGCTGGCACCGTGCTGTCTGTTGAGATTGTGTATGATCGTGTCACGAGTAGAAGCAGGGGATTCGCATTTGTTACAATGGCAAGCGTAGAAGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCAAAGGTGAACTTCCCAGAGGTACCGAAAGGTGGGGAAAGATTGGTAATGGCGGCAAGAGTGAGGAACAACAACAGAGGCTTTGTAGACAGCCCTTACAAGATATATTGTGGAAACCTTGGGTGGGGAGTGAACTCACAGAGTCTTAGAGAAGCTTTTGCTGAGCAGCCAGGTGTATTGAGTGCCAAGGTCGTCTATGAGAAGGACAGTGGAAGATCTCGAGGTTTCGGCTTTGTTTCTTTTACCACTGCCGAGTCTGCAGCAGCTGCCTTGGACTTCATGAATGGTCTGGAAGTACAAGGTCGCCCTTTGCGGTTGAATATGGCTGAAACTAGGACAGCATCATCTCCACCAGTAATCGGGGAAGATTCAGGAATCAATGTTGAAAGCTCGGAATTGGTCTCGAGTGCCAGAACATAA 957 0.4734 MAAAASFSSSICNRIYNLSLTHSSISRTSNFPQRPIFQKPLNLNHKSQNFSLSFLPLHRLSPPSATFDGSEVGQDITESRQDEPVTETSEKTEQEAEQKVSDSNDNEAGRLYIGNLPYSITNSQLEELFGEAGTVLSVEIVYDRVTSRSRGFAFVTMASVEDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMAARVRNNNRGFVDSPYKIYCGNLGWGVNSQSLREAFAEQPGVLSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDFMNGLEVQGRPLRLNMAETRTASSPPVIGEDSGINVESSELVSSART 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02610 318 SUPERFAMILY RNA-binding domain, RBD 208 293 IPR035979 GO:0003676
Viun1g02610 318 CDD RRM2_NsCP33_like 213 288 - -
Viun1g02610 318 Gene3D - 65 193 IPR012677 -
Viun1g02610 318 Gene3D - 197 297 IPR012677 -
Viun1g02610 318 SMART rrm1_1 110 183 IPR000504 GO:0003723
Viun1g02610 318 SMART rrm1_1 213 286 IPR000504 GO:0003723
Viun1g02610 318 PANTHER OS02G0815200 PROTEIN 35 291 - -
Viun1g02610 318 MobiDBLite consensus disorder prediction 75 104 - -
Viun1g02610 318 FunFam 33 kDa ribonucleoprotein, chloroplastic 194 298 - -
Viun1g02610 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Viun1g02610 318 MobiDBLite consensus disorder prediction 292 318 - -
Viun1g02610 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
Viun1g02610 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Viun1g02610 318 MobiDBLite consensus disorder prediction 66 108 - -
Viun1g02610 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Viun1g02610 318 SUPERFAMILY RNA-binding domain, RBD 101 186 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02610 Viun-Chr1 36201045 36203380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02610 97 291 Eukaryotic Initiation Factors Gene Family AT3G16380 32.663 1.27e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02610 - - gmx:100814852 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02610 1 36201045 36203380 Viun7g00750 7 6348498 6350440 PCT