Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun1g02609 | ATGGCTGCTGCAGCTTCTTTTTCCTCTTCTATCTGCAACAGAATATACAACCTTTCCCTCACCCACTCTTCCATTTCACGCACCTCCAACTTCCCTCAGAGACCCATTTTCCAAAAACCACTCAATCTTAACCACAAGTCCCAAAATTTCAGTCTTTCATTTCTCCCACTTCATCGTCTGTCCCCACCGTCCGCCACCTTCGATGGGTCGGAAGTGGGTCAAGACATCACAGAGTCCCGACAAGACGAACCGGTAACAGAAACCTCTGAAAAAACAGAACAAGAGGCAGAGCAAAAGGTTTCAGACTCGAACGATAACGAGGCCGGGAGGCTCTATATTGGAAACTTGCCATATTCAATTACTAATTCCCAATTGGAAGAGCTCTTTGGAGAAGCTGGCACCGTGCTGTCTGTTGAGATTGTGTATGATCGTGTCACGAGTAGAAGCAGGGGATTCGCATTTGTTACAATGGCAAGCGTAGAAGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCAAAGGTGAACTTCCCAGAGGTACCGAAAGGTGGGGAAAGATTGGTAATGGCGGCAAGAGTGAGGAACAACAACAGAGGCTTTGTAGACAGCCCTTACAAGATATATTGTGGAAACCTTGGGTGGGGAGTGAACTCACAGAGTCTTAGAGAAGCTTTTGCTGAGCAGCCAGGTGTATTGAGTGCCAAGGTCGTCTATGAGAAGGACAGTGGAAGATCTCGAGGTTTCGGCTTTGTTTCTTTTACCACTGCCGAGTCTGCAGCAGCTGCCTTGGACTTCATGAATGGAAGTACAAGGTCGCCCTTTGCGGTTGAATATGGCTGA | 861 | 0.475 | MAAAASFSSSICNRIYNLSLTHSSISRTSNFPQRPIFQKPLNLNHKSQNFSLSFLPLHRLSPPSATFDGSEVGQDITESRQDEPVTETSEKTEQEAEQKVSDSNDNEAGRLYIGNLPYSITNSQLEELFGEAGTVLSVEIVYDRVTSRSRGFAFVTMASVEDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMAARVRNNNRGFVDSPYKIYCGNLGWGVNSQSLREAFAEQPGVLSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDFMNGSTRSPFAVEYG | 286 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun1g02609 | 286 | Gene3D | - | 196 | 283 | IPR012677 | - | |
Viun1g02609 | 286 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 109 | 187 | IPR000504 | GO:0003723 | |
Viun1g02609 | 286 | SUPERFAMILY | RNA-binding domain, RBD | 109 | 276 | IPR035979 | GO:0003676 | |
Viun1g02609 | 286 | PANTHER | OS02G0815200 PROTEIN | 35 | 276 | - | - | |
Viun1g02609 | 286 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 212 | 286 | IPR000504 | GO:0003723 | |
Viun1g02609 | 286 | SMART | rrm1_1 | 110 | 183 | IPR000504 | GO:0003723 | |
Viun1g02609 | 286 | SMART | rrm1_1 | 213 | 286 | IPR000504 | GO:0003723 | |
Viun1g02609 | 286 | Gene3D | - | 65 | 193 | IPR012677 | - | |
Viun1g02609 | 286 | MobiDBLite | consensus disorder prediction | 75 | 104 | - | - | |
Viun1g02609 | 286 | MobiDBLite | consensus disorder prediction | 66 | 108 | - | - | |
Viun1g02609 | 286 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 111 | 179 | IPR000504 | GO:0003723 | |
Viun1g02609 | 286 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 214 | 277 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun1g02609 | Viun-Chr1 | 36201045 | 36203384 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun1g02609 | 109 | 276 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 30.357 | 4.29e-14 | 70.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun1g02609 | - | - | gmx:100814852 | 439.113 |