Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02609 ATGGCTGCTGCAGCTTCTTTTTCCTCTTCTATCTGCAACAGAATATACAACCTTTCCCTCACCCACTCTTCCATTTCACGCACCTCCAACTTCCCTCAGAGACCCATTTTCCAAAAACCACTCAATCTTAACCACAAGTCCCAAAATTTCAGTCTTTCATTTCTCCCACTTCATCGTCTGTCCCCACCGTCCGCCACCTTCGATGGGTCGGAAGTGGGTCAAGACATCACAGAGTCCCGACAAGACGAACCGGTAACAGAAACCTCTGAAAAAACAGAACAAGAGGCAGAGCAAAAGGTTTCAGACTCGAACGATAACGAGGCCGGGAGGCTCTATATTGGAAACTTGCCATATTCAATTACTAATTCCCAATTGGAAGAGCTCTTTGGAGAAGCTGGCACCGTGCTGTCTGTTGAGATTGTGTATGATCGTGTCACGAGTAGAAGCAGGGGATTCGCATTTGTTACAATGGCAAGCGTAGAAGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCAAAGGTGAACTTCCCAGAGGTACCGAAAGGTGGGGAAAGATTGGTAATGGCGGCAAGAGTGAGGAACAACAACAGAGGCTTTGTAGACAGCCCTTACAAGATATATTGTGGAAACCTTGGGTGGGGAGTGAACTCACAGAGTCTTAGAGAAGCTTTTGCTGAGCAGCCAGGTGTATTGAGTGCCAAGGTCGTCTATGAGAAGGACAGTGGAAGATCTCGAGGTTTCGGCTTTGTTTCTTTTACCACTGCCGAGTCTGCAGCAGCTGCCTTGGACTTCATGAATGGAAGTACAAGGTCGCCCTTTGCGGTTGAATATGGCTGA 861 0.475 MAAAASFSSSICNRIYNLSLTHSSISRTSNFPQRPIFQKPLNLNHKSQNFSLSFLPLHRLSPPSATFDGSEVGQDITESRQDEPVTETSEKTEQEAEQKVSDSNDNEAGRLYIGNLPYSITNSQLEELFGEAGTVLSVEIVYDRVTSRSRGFAFVTMASVEDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMAARVRNNNRGFVDSPYKIYCGNLGWGVNSQSLREAFAEQPGVLSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDFMNGSTRSPFAVEYG 286
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02609 286 Gene3D - 196 283 IPR012677 -
Viun1g02609 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Viun1g02609 286 SUPERFAMILY RNA-binding domain, RBD 109 276 IPR035979 GO:0003676
Viun1g02609 286 PANTHER OS02G0815200 PROTEIN 35 276 - -
Viun1g02609 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 286 IPR000504 GO:0003723
Viun1g02609 286 SMART rrm1_1 110 183 IPR000504 GO:0003723
Viun1g02609 286 SMART rrm1_1 213 286 IPR000504 GO:0003723
Viun1g02609 286 Gene3D - 65 193 IPR012677 -
Viun1g02609 286 MobiDBLite consensus disorder prediction 75 104 - -
Viun1g02609 286 MobiDBLite consensus disorder prediction 66 108 - -
Viun1g02609 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Viun1g02609 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 277 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun1g02609 Viun-Chr1 36201045 36203384 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02609 109 276 Eukaryotic Initiation Factors Gene Family AT3G16380 30.357 4.29e-14 70.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02609 - - gmx:100814852 439.113