Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02607 ATGAACGACTTGCTATCGAGTTTGTTCTGGAAGGGAAAGCAGCAGCAGCAGCAGCAGCAAGAACAAGAAGGGCAGCACGTGATCGAAATAACACAAGGTGGCATGGACATGGACAAGTTCTTCAAAGAAGTGGAATCGGTGAAGGAAGAACTGAAGGAGCTAGAGCGTCTCCACCTAAGTCTCCGTGCCTCAAACCAAAACGGAAAAGCGCTTCACAGCCCTAAGGGCGTTAGGGAGCTTCGATCTCGCATGGACCTGGACGTGGCTCTTGCTCTCACCAAAGCCAAGCTTGTGAAGACTCGCTTGGAGGCTCTCCACCGCGCCAACCAAGCCACCCTCTCCTTGCCCGACTGCGGACCCGGTTCCTACTCCCACCGGACCCGAATCGCGCTGGTCGGAGCCTTGACCAAGAATCTCAAACACTCCATGGACAGTTTCAATAAGCTGAGAGAGCAGATATCGTACGAGTACCGAGACACCGTGCAACGTAGATATTACGCTGTCACCGGAGAGAACCCTGATCCTGAAACCATTGATCTCCTCATCTCTACGGGTGAGAGTGAAAGTTTCTTACAGAAAGCCATCCAACAGCAAGGGAGAGCCACCATAATGGACACCATCCAAGAGATTCAGGAGAGACATGGCACGGTAAAAGAGATAGAGAGAAGTCTACATGAGCTGCACCAAGTGTTCTTGGACATGGCGGTGCTGGTCCAACATCAGGGTGAACACTTGGATGACATAGAGAGCCACATGGCGCTTGCAAGTTCCTCCGTCATCAAAGGCGTGCATCATTTGCAGGTTGTGAAGAATCATCAGAAGAACACCCGTAACTTCACCTGTTTCGCCATACTCCTCTTCATTATCGTTTTGGTCATAGTTCTCCCCATTGTTTTCAGAAGTTGA 906 0.5077 MNDLLSSLFWKGKQQQQQQQEQEGQHVIEITQGGMDMDKFFKEVESVKEELKELERLHLSLRASNQNGKALHSPKGVRELRSRMDLDVALALTKAKLVKTRLEALHRANQATLSLPDCGPGSYSHRTRIALVGALTKNLKHSMDSFNKLREQISYEYRDTVQRRYYAVTGENPDPETIDLLISTGESESFLQKAIQQQGRATIMDTIQEIQERHGTVKEIERSLHELHQVFLDMAVLVQHQGEHLDDIESHMALASSSVIKGVHHLQVVKNHQKNTRNFTCFAILLFIIVLVIVLPIVFRS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02607 301 SUPERFAMILY t-snare proteins 34 262 IPR010989 GO:0016020|GO:0016192
Viun1g02607 301 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun1g02607 301 CDD SNARE_syntaxin1-like 206 267 - -
Viun1g02607 301 Gene3D - 37 164 - -
Viun1g02607 301 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Viun1g02607 301 Pfam SNARE domain 245 295 IPR000727 -
Viun1g02607 301 SMART tSNARE_6 202 269 IPR000727 -
Viun1g02607 301 CDD SynN 37 194 IPR006011 GO:0016020
Viun1g02607 301 PANTHER SYNTAXIN 23 290 IPR045242 -
Viun1g02607 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Viun1g02607 301 Gene3D - 196 300 - -
Viun1g02607 301 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 34 164 - -
Viun1g02607 301 Coils Coil 37 64 - -
Viun1g02607 301 FunFam Syntaxin 132 200 299 - -
Viun1g02607 301 SMART SynN_4 32 158 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02607 Viun-Chr1 36191842 36193330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02607 31 281 SNARE and Associated Proteins AT3G11820 62.948 5.93e-114 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02607 K08486 - gmx:100790221 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02607 1 36191842 36193330 Viun7g00188 7 1417469 1419036 PCT