Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02606 ATGCAGGACTTGTTGTCCACCACCTCCTCCTGCCCCAGCAACCGGTTTCCGCCATCGTCCGGTCACAGTGTCATCGAGATGGCAGGCGGCGACGACGACGACGACGGAGCAACGAGCCTGGTCACGTACTTCGGCAACGTGGAAGCAATAACGGAAGAGCTGAACGAGGTGGAGCGGTTGAAGCAGAATCTGAAGAGGTCTCACGAAAAAGGCAAGACCCTTCACAATGGTAAAGCCGTGAAGGACCTTCGCTTCGCCATGGAAGCTGACGTGGCACTCGCTCTGCAGACCGCGAAGCTCATCAGGTTCAAGTTGGAGACGCTCGAACGCGCCAACGCCAACCACCGGAGCCTCCCCGGTTGTGGACCGGGTTCGTCCTCCGACCGGTCCCGAACCTCCGTGGTGATCTCCCTGAGGAAGAAGCTGAAGAACTCCTTGGACGGCTTCAATGAACTGCGTCAACAGATAAACGCAGAACACCGTGAAACCGTCCAACGCCAATATTTCACTGTCACCGGCAAAAATCCCGACGACGAAACCCTCGACCTCTTGATCTCTTCCGGTGAGAGTGAGAATTTAGTAGAAATAGCGATTGAGCAGGGTAGGGGAAGAATTGAGGAGTGCATTAATGAAATAAAAGAGAGGCATAATGGGATGAAAGAGTTGGAGATGAATCTGAAGGAGTTGCATCAGGTGTTCCTTGACATGGCAGTGCTGATTCAATCTCAAGGGGAGCAATTGGATGATATAGAGAATCAAGTGGCAAGAGCAAACTCCTTCGTCAGGAATGGGACTCGGAATCTGGAAAGTGCAAGGAAGGAGCAGAAAAACCACCGCAAATGGGGCTGCTGTGCTATTATCCTTCTTCTAGCAATTGTGTTGTTCGTTGTGCTCTTTTTTGTCAGGCCATGGCAAAAGTAA 921 0.5201 MQDLLSTTSSCPSNRFPPSSGHSVIEMAGGDDDDDGATSLVTYFGNVEAITEELNEVERLKQNLKRSHEKGKTLHNGKAVKDLRFAMEADVALALQTAKLIRFKLETLERANANHRSLPGCGPGSSSDRSRTSVVISLRKKLKNSLDGFNELRQQINAEHRETVQRQYFTVTGKNPDDETLDLLISSGESENLVEIAIEQGRGRIEECINEIKERHNGMKELEMNLKELHQVFLDMAVLIQSQGEQLDDIENQVARANSFVRNGTRNLESARKEQKNHRKWGCCAIILLLAIVLFVVLFFVRPWQK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02606 306 SMART SynN_4 35 161 IPR006011 GO:0016020
Viun1g02606 306 MobiDBLite consensus disorder prediction 1 20 - -
Viun1g02606 306 SMART tSNARE_6 204 271 IPR000727 -
Viun1g02606 306 PANTHER SYNTAXIN 54 290 IPR045242 -
Viun1g02606 306 Pfam SNARE domain 245 297 IPR000727 -
Viun1g02606 306 Gene3D - 40 167 - -
Viun1g02606 306 Gene3D - 204 302 - -
Viun1g02606 306 ProSitePatterns Syntaxin / epimorphin family signature. 215 254 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun1g02606 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Viun1g02606 306 MobiDBLite consensus disorder prediction 1 31 - -
Viun1g02606 306 Coils Coil 139 159 - -
Viun1g02606 306 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 37 167 - -
Viun1g02606 306 FunFam Syntaxin 132 202 302 - -
Viun1g02606 306 CDD SynN 40 191 IPR006011 GO:0016020
Viun1g02606 306 SUPERFAMILY t-snare proteins 42 264 IPR010989 GO:0016020|GO:0016192
Viun1g02606 306 Pfam Syntaxin 43 244 IPR006011 GO:0016020
Viun1g02606 306 CDD SNARE_syntaxin1-like 209 269 - -
Viun1g02606 306 Coils Coil 47 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02606 Viun-Chr1 36174604 36175848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02606 36 304 SNARE and Associated Proteins AT3G11820 61.111 3.66e-111 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02606 K08486 - jre:109013519 352.058