Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02603 ATGGACAACGAGATCGATGTTCCTTCTTTCTTCGTCTGCCCCATTTCCTTAGAAATCATGAAGGATCCGGTGACGGTCTCGACGGGCATCACCTACGACCGTGAAAGCATCGAAACGTGGCTGTTTTCCAAGAAAAATACCACATGCCCCGTCACCAAACAACCCTTGATGGATTACACCGATCTCACCCCTAACCACACTCTCCGGAGACTCATCCAAGCCTGGTGTACCATGAACGCTTCTCACGGCGTCGAAAGGATCCCAACCCCAAAACCTCCTGTTAACAGGAATCAGATTTCTAAGCTTCTCAAAGACGCTTCTCACTCCCCTCTCGTTTGCCTCCGAAGACTCAAATCCATCGCTTCAGGAAGCGAGACAAATAAGCGATGCATGGAGGCTGCCGGTGCTGTTGAGTTCCTAGCATCGATTGTAATGAACACCAACAGCAACGATTCTTCAAATGGGGTTGAACCGAATGAAGGATCTGGATTCGAGTTGAAAACAACTGCAAGCGATGAAGCATTGAACCTGCTTCACACTCTTGATTTAACTGAACAAGGGTTGAAGACTCTTCTAGGCTTCAGAAACGGAGAGTTTATCGAGTCTTTGACGAGAGTCATGCAGAAGGGGTTCTTTGAATCACGCGCTTATGCAGTTTTCTTGTTGAAATCTATGTCAGAAGTGGCTGATCCAGTGCAACTGCTGCATCTAAGACAAGAAATTTTCGTGGAGCTAGTACAGGTGTTGAGGGATCAGATTTCAACGAAGACATCAAAGGATATCCTTCAAACCTTAATCCAGTTCTGTCCTTGGGGGAGGAACAGGGTGAAGGCTGTGGAAGCAGGAGCCGTTCCTGTTTTGATAGAGCTTCTTCTGGATTGCAAGGAAAGAAAGCCTTGCGAGATGATGCTGGTGCTGTTGGAGGTACTGTGTCAGTGTGCGGAGGGAAGAGCAGAACTATTGAGTCACGGAGCAGGTCTTGCCATTGTTTCAAAGAAGATTCTAAGAGTTTCGACATTGGCGAATGATAGGGCTGTCAGGATTCTTCTTTCTGTCTCCAAATTCTCTGCGACTCCGCATGTTGTTCAAGAGATGCTGAAACTGGGTGTGGCGGCGAAACTGTGCTTGGTGCTTCAGGTGGATAGCGGAAACAAGGCGAAGGAAAAGGCAAGAGAGATACTGAAATTGCATGCTCGGGCGTGGAAGAATACCCCATGCATACCCAACACTTTACTTTCTTCATACCCGGCTTATGCGTGA 1260 0.4762 MDNEIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIETWLFSKKNTTCPVTKQPLMDYTDLTPNHTLRRLIQAWCTMNASHGVERIPTPKPPVNRNQISKLLKDASHSPLVCLRRLKSIASGSETNKRCMEAAGAVEFLASIVMNTNSNDSSNGVEPNEGSGFELKTTASDEALNLLHTLDLTEQGLKTLLGFRNGEFIESLTRVMQKGFFESRAYAVFLLKSMSEVADPVQLLHLRQEIFVELVQVLRDQISTKTSKDILQTLIQFCPWGRNRVKAVEAGAVPVLIELLLDCKERKPCEMMLVLLEVLCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLSVSKFSATPHVVQEMLKLGVAAKLCLVLQVDSGNKAKEKAREILKLHARAWKNTPCIPNTLLSSYPAYA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02603 419 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Viun1g02603 419 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Viun1g02603 419 SUPERFAMILY RING/U-box 4 82 - -
Viun1g02603 419 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
Viun1g02603 419 CDD RING-Ubox_PUB 8 58 IPR045210 -
Viun1g02603 419 Gene3D - 99 404 IPR011989 -
Viun1g02603 419 SUPERFAMILY ARM repeat 113 331 IPR016024 -
Viun1g02603 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Viun1g02603 419 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Viun1g02603 419 FunFam RING-type E3 ubiquitin transferase 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02603 Viun-Chr1 36132745 36134382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02603 1 417 U-box Gene Family AT3G52450 56.787 4.93e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02603 - - gmx:100811258 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02603 1 36132745 36134382 Viun1g02603 1 36132745 36134382 ECH
Viun1g02603 1 36132745 36134382 Viun7g00178 7 1337819 1339643 PCT
Viun7g00179 7 1359540 1361311 Viun1g02603 1 36132745 36134382 PCT