Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02600 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCCGGTGCCGCCGACGGACTCCAAACTCTTGTCCTCATGAATCCAGGTTACATCCACTACCCCGACGCGCCGTCGCAGCCCCCGCCCTCACACGCTGCGGGAAATCTCGTGTTTCTCAACCCCGCCGCGGTTGCCGGCGCCAACAGCAACAACAACTTCAACCCTCACGCGCCGCCCTCACACACCCAACAATTCGTTGGAATCCCCCTCCCGGCTTCCCAGGACCTCAACCACCACTCCATGCACGGGCACCACGATGTCTCGGCGCTGCATGGCTTCCTCCCACGCATGCAGTACAATCACTGGAACGCTTTAGACCCGGCCTCGGCGGCGCGTGAGACCCCACGCGCGCAGCAGGGCTTGTCTCTGGGGCTGGGGTCGTTCCGGGAGGGTCAGGCGCCGGGCATGTCCGGCGAAGACTTGCGCGTGTCGGGGAGTTCGCCGTCGTCGGCGTCTGGGGTTACCAACAATGGAGCTTCGGGCATTCAGAGCGTTCTCCTGAGCTCAAAGTACTTGAAGGCAGCGCATGAGCTTCTAGAAGAGGTTGTGAATGTTAACAATGGGATTGGCACTGAGTTGGGTAAAAAGAGTGGGGGACAGACGAAGGTGATTGGAGAATCATCCGCAGCAGGTAGTGGAGATGGTTCGGTTGGTGGTGAAGGAAACGGAAAACGTAGCTCTGAGCTATCAACTGCAGAAAGACAAGAAATCCAGATGAAGAAAGCCAAACTGATTGCCATGCTTGATGAGGTGGAGCAAAGGTACAGACAGTACCACCAGCAGATGGAGATTGTGGTGTCATCATTTGAGCAAGCTGCGGGGATTGGGTCTGCGAGGACATACACGGCTCTTGCATTGCAAACAATCTCTAAGCAATTTCGGTGTTTGAAGGATGCTATTGCAGGACAGGTTCGAGCTGCAAACAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATAGAAGGTTCGAGGCTCAAATATGTGGACCATCATCTGAGGCAACAACGAGCTCTTCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGGGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCCTGGCTCTTCGAACACTTCCTCCACCCTTACCCCAAGGACTCGGACAAACACATGTTGGCAAAGCAAACAGGGCTAACAAGGAGCCAGGTCTCAAATTGGTTTATAAATGCTCGGGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAGATGAAGGATCATGAACAGAATGGATCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTTCTACGAAAATGGCAGCACCACCAGAGAAAGGTCCTTCCGGTGAAACCGAGGCTAAAAGTTTCAATTCCAAACAAGAAGTTTCAAAGAGCCAGAACACTGGTATGGTTTCAATTTCTAGAGCATCAACGTCACCACTTGGTGGGAGTGTGAGAAACCAATCAGGATTCAGATTCATGGGGTCTTCGGAGCTAGAAGGGATCACACAGGGAAGTCCGAAGAAAGCAAGGAATCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATGAACATCGATGTGAAGCCCAATGAGGCAAACAATGAGCAACTCTCAATGAAATTTGGGGAGGAAAGGCAAGGTAGAAACGAATCCTCTTTCATGGGAAACCAAACAAACTTCATTGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGATTTGATGCAGAGCAGTTTGCTCCGAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGATTCATTACCCGGAACTCATCAAACATTCCTCCCAAACCAAAACATTCAACTGGGTAGAAGCTTGGACATTGGTGAACCAAATGAGTTTGGTAGCATAAACACTTCGTCTCCTCACTCTTCAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTGA 2040 0.5025 MATYFHHGNSEIQSGAADGLQTLVLMNPGYIHYPDAPSQPPPSHAAGNLVFLNPAAVAGANSNNNFNPHAPPSHTQQFVGIPLPASQDLNHHSMHGHHDVSALHGFLPRMQYNHWNALDPASAARETPRAQQGLSLGLGSFREGQAPGMSGEDLRVSGSSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNNGIGTELGKKSGGQTKVIGESSAAGSGDGSVGGEGNGKRSSELSTAERQEIQMKKAKLIAMLDEVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQNGSEDKSSKSNEDSSTKMAAPPEKGPSGETEAKSFNSKQEVSKSQNTGMVSISRASTSPLGGSVRNQSGFRFMGSSELEGITQGSPKKARNHEMMHSPNSVPSMNIDVKPNEANNEQLSMKFGEERQGRNESSFMGNQTNFIGGFGQYPIGDIGRFDAEQFAPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGSINTSSPHSSAAYESISMQNPKRFAAQLLPDFVT 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02600 679 MobiDBLite consensus disorder prediction 207 246 - -
Viun1g02600 679 CDD homeodomain 363 424 IPR001356 GO:0003677
Viun1g02600 679 MobiDBLite consensus disorder prediction 642 660 - -
Viun1g02600 679 MobiDBLite consensus disorder prediction 155 170 - -
Viun1g02600 679 Pfam Associated with HOX 178 314 IPR006563 -
Viun1g02600 679 Gene3D - 366 445 - -
Viun1g02600 679 Coils Coil 247 274 - -
Viun1g02600 679 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 450 - -
Viun1g02600 679 SUPERFAMILY Homeodomain-like 364 430 IPR009057 -
Viun1g02600 679 SMART prehox3 173 315 IPR006563 -
Viun1g02600 679 SMART HOX_1 363 427 IPR001356 GO:0003677
Viun1g02600 679 MobiDBLite consensus disorder prediction 434 450 - -
Viun1g02600 679 Pfam Homeobox KN domain 380 419 IPR008422 GO:0003677|GO:0006355
Viun1g02600 679 MobiDBLite consensus disorder prediction 468 520 - -
Viun1g02600 679 ProSiteProfiles 'Homeobox' domain profile. 360 423 IPR001356 GO:0003677
Viun1g02600 679 MobiDBLite consensus disorder prediction 139 170 - -
Viun1g02600 679 FunFam BEL1-like homeodomain protein 9 366 428 - -
Viun1g02600 679 MobiDBLite consensus disorder prediction 434 544 - -
Viun1g02600 679 MobiDBLite consensus disorder prediction 641 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02600 Viun-Chr1 36101771 36111615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02600 1 678 Homeobox Transcription Factor Family AT2G35940 50.809 1.94e-178 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun1g02600 POX 3.1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02600 - - gmx:100810901 1219.14