Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02565 ATGTCGATAAACCACTACTCACCAGAAGCCAGACTATACTGTACCGAGCAACAACAGGCGGCCACGTGGCTGGGAAACTCTCACACCCCTCGTTTCAACCTGAACGACAACCAGGAGGAGGTGGAGGAGGAGGAAGAGGAGGTGATGGAGAAGGGTGGTGGTGAGGCGGCGGCGGAAGAGGAGGAGAAGGAAGCGATGTTCGAGAAGCCGTTGACGCCAAGCGACGTGGGGAAGCTGAACCGGTTGGTGATCCCGAAACAGCACGCGGAGAAGCACTTCCCGCTGGAGTCGTCGTCGTCGTCGTCGTGCGGTGACAGCGCGAAGGGCGTGTTACTGAGTTTCGAGGACGAGTCCGGGAAGTGCTGGCGTTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTACGTCAAGGACAAACGGCTCCACGCTGGCGACGTCGTTTTCTTCCACAGACACCGCACCCATCCTCAACGCTTCTTCATCACCTCCACCCGCCGCCAACCCAACCCCCCCGCTCACGTTACCACCACCGCCACACCCTCCTTCTACTCTGCGCACCCTTATCCTGCGCATCACCTCCCTTTCCCATACCAACCTCACTCCCTTCATGCACCTCCAGGTGGAGGGTCCCAAGGACAGAACCAAACGACACCGGGAGGGAACAGTTCAGGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAAGGATTCCCAATGCTCTTACACTCTCTCTTCAACAACAACAACAACAACAACAACACTTTCTCACCACCACCACTTACACCCTCAAACCTCTTTTTCTTCTTCTTCTTCTTCTTCTTCCTCAAACCCTCACCATCACATGCTACGTCAACAACCGTAA 906 0.553 MSINHYSPEARLYCTEQQQAATWLGNSHTPRFNLNDNQEEVEEEEEEVMEKGGGEAAAEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLESSSSSSCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFITSTRRQPNPPAHVTTTATPSFYSAHPYPAHHLPFPYQPHSLHAPPGGGSQGQNQTTPGGNSSGGRVLRLFGVNMECQPDKDSQCSYTLSSTTTTTTTTLSHHHHLHPQTSFSSSSSSSSSNPHHHMLRQQP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02565 301 MobiDBLite consensus disorder prediction 267 301 - -
Viun1g02565 301 ProSiteProfiles B3 DNA-binding domain profile. 67 176 IPR003340 GO:0003677
Viun1g02565 301 SUPERFAMILY DNA-binding pseudobarrel domain 64 174 IPR015300 -
Viun1g02565 301 CDD B3_DNA 66 163 IPR003340 GO:0003677
Viun1g02565 301 Pfam B3 DNA binding domain 67 170 IPR003340 GO:0003677
Viun1g02565 301 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 24 277 IPR044800 GO:0003700
Viun1g02565 301 MobiDBLite consensus disorder prediction 25 72 - -
Viun1g02565 301 MobiDBLite consensus disorder prediction 203 236 - -
Viun1g02565 301 MobiDBLite consensus disorder prediction 216 232 - -
Viun1g02565 301 Coils Coil 31 51 - -
Viun1g02565 301 Gene3D - 54 182 IPR015300 -
Viun1g02565 301 MobiDBLite consensus disorder prediction 51 69 - -
Viun1g02565 301 SMART B3_2 67 174 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02565 Viun-Chr1 35807973 35809709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02565 60 262 RAV Transcription Factor Family AT5G06250 49.083 9.46e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun1g02565 B3 6.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02565 K09287 - gmx:100802734 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02565 1 35807973 35809709 Viun1g02565 1 35807973 35809709 ECH
Viun1g02565 1 35807973 35809709 Viun7g00762 7 6436491 6438754 PCT