Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02562 ATGGCGGCTGTTAGAAAAATTATTCAGTCCAATAAAAGTATAAATTTATCGTCATCTCTTTTCTCTTTTCGCCGAGGAATTGCTTACAAGCTTTTTGTTGGAGGACTTTCCTTTTGCACCACAGAGAAAGCACTGTCAGAGGCATTTTCCAACTACGGGCAAGTTATTGAAGCCAAAGTTGTAACAGATAGGGTATCAGACAGATCAAAGGGATTTGGGTTTGTCACCTTTGCTTCACCAGATGAGGCTGAGAATGCCATAGCAGACATGAAAGGAAAGACATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAACCCAATATCAACACTAATGGTGCAATGCCAATTGCTAGAGGACCTCCTGAACCAACACCAGACACTTGA 387 0.4057 MAAVRKIIQSNKSINLSSSLFSFRRGIAYKLFVGGLSFCTTEKALSEAFSNYGQVIEAKVVTDRVSDRSKGFGFVTFASPDEAENAIADMKGKTLNGRVIFVDYAKPNINTNGAMPIARGPPEPTPDT 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02562 128 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 100 IPR000504 GO:0003723
Viun1g02562 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Viun1g02562 128 SUPERFAMILY RNA-binding domain, RBD 29 120 IPR035979 GO:0003676
Viun1g02562 128 SMART rrm1_1 30 103 IPR000504 GO:0003723
Viun1g02562 128 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 19 109 - -
Viun1g02562 128 Gene3D - 24 122 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02562 Viun-Chr1 35786876 35788102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02562 31 113 Eukaryotic Initiation Factors Gene Family AT1G49760 37.647 1.94e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02562 - - var:108327579 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02562 1 35786876 35788102 Viun1g02562 1 35786876 35788102 ECH