Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02553 ATGGAAATTATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAAGAGCTGATTTCGTTCTATCTTCATAATAAACTCGAAGGAGAAAGAGAGGACATGAATCGTGTGATTCCGGTGGTTGATATCTACGACTACAACCCCTCCCAACTCCCACAAATCTCTGGAGAGGCGAGTCTGAGAGACACGGAACAATGGTTCTTTTTCATTCCGAGGCAAGAGAGCGAAGCTCGAGGAGGAAGACCAAAACGTCTCACGACCACAGGGTACTGGAAAGCAACAGGGTCTCCGAATCATGTTTATTCTTCGGATAATCGAATCATAGGCATTAAAAGGACTATGGTTTTCTACAGTGGAAGAGCTCCAAACGGAGCCAAAACCGATTGGAAGATGAACGAGTATACCGCCATCAAAGGTGAACAACCATCACAGTTAAGGAAGGAATTCAGTTTATGCAGAGTGTACAAAAAATCGAAGTGTTTGCGTGCATTTGATAGAAGACCACCACCGAGGAGGAACACGGTGAGGCATTCGATTGCTGAAAATGGTGAAGAGCAAGAAAAGGGTTCGACCTCAACGTGTTATGATTATCATCAGCATCAAATGTTGGAGAGAAGTGCAACATGTTCGCCGGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCGACCCATCCTGCACGGCGAGGGAGGAACGCAAATGGATGTCGACAATGACAACGACAACGACCCTTTTTTGGATTGGGAGAGAGTGGATTTGTTCTTGGGATCCGAATCATGA 777 0.462 MEIMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYTAIKGEQPSQLRKEFSLCRVYKKSKCLRAFDRRPPPRRNTVRHSIAENGEEQEKGSTSTCYDYHQHQMLERSATCSPESSSSGDLDHDRPILHGEGGTQMDVDNDNDNDPFLDWERVDLFLGSES 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02553 258 ProSiteProfiles NAC domain profile. 4 156 IPR003441 GO:0003677|GO:0006355
Viun1g02553 258 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Viun1g02553 258 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Viun1g02553 258 Gene3D NAC domain 13 160 IPR036093 GO:0003677|GO:0006355
Viun1g02553 258 MobiDBLite consensus disorder prediction 162 183 - -
Viun1g02553 258 MobiDBLite consensus disorder prediction 162 191 - -
Viun1g02553 258 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 201 - -
Viun1g02553 258 MobiDBLite consensus disorder prediction 204 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02553 Viun-Chr1 35724730 35726351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02553 7 251 NAC Transcription Factor Family AT3G44350 44.758 2.12e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g02553 NAM 5.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02553 - - pvu:PHAVU_001G192000g 464.536