Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02552 ATGGAAATTATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAAGAGCTGATTTCGTTCTATCTTCATAATAAACTCGAAGGAGAAAGAGAGGACATGAATCGTGTGATTCCGGTGGTTGATATCTACGACTACAACCCCTCCCAACTCCCACAAATCTCTGGAGAGGCGAGTCTGAGAGACACGGAACAATGGTTCTTTTTCATTCCGAGGCAAGAGAGCGAAGCTCGAGGAGGAAGACCAAAACGTCTCACGACCACAGGGTACTGGAAAGCAACAGGGTCTCCGAATCATGTTTATTCTTCGGATAATCGAATCATAGGCATTAAAAGGACTATGGTTTTCTACAGTGGAAGAGCTCCAAACGGAGCCAAAACCGATTGGAAGATGAACGAGTATACCGCCATCAAAGGTGAACAACCATCACAGTTGCAGTTAAGGAAGGAATTCAGTTTATGCAGAGTGTACAAAAAATCGAAGTGTTTGCGTGCATTTGATAGAAGACCACCACCGAGGAGGAACACGGTGAGGCATTCGATTGCTGAAAATGGTGAAGAGCAAGAAAAGGGTTCGACCTCAACGTGTTATGATTATCATCAGCATCAAATGTTGGAGAGAAGTGCAACATGTTCGCCGGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCGACCCATCCTGCACGGCGAGGGAGGAACGCAAATGGATGTCGACAATGACAACGACAACGACCCTTTTTTGGATTGGGAGAGAGTGGATTTGTTCTTGGGATCCGAATCATGA 783 0.4623 MEIMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYTAIKGEQPSQLQLRKEFSLCRVYKKSKCLRAFDRRPPPRRNTVRHSIAENGEEQEKGSTSTCYDYHQHQMLERSATCSPESSSSGDLDHDRPILHGEGGTQMDVDNDNDNDPFLDWERVDLFLGSES 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02552 260 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Viun1g02552 260 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Viun1g02552 260 MobiDBLite consensus disorder prediction 164 185 - -
Viun1g02552 260 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 203 - -
Viun1g02552 260 Gene3D NAC domain 13 162 IPR036093 GO:0003677|GO:0006355
Viun1g02552 260 MobiDBLite consensus disorder prediction 206 245 - -
Viun1g02552 260 MobiDBLite consensus disorder prediction 164 193 - -
Viun1g02552 260 ProSiteProfiles NAC domain profile. 4 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02552 Viun-Chr1 35724730 35726351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02552 7 253 NAC Transcription Factor Family AT3G44350 44.758 4.25e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g02552 NAM 5.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02552 - - pvu:PHAVU_001G192000g 462.225