Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02542 ATGGATATGTCAAATCCTGCGGCCTTTGTCAATGCAGAACTACTGCACTTTTATGTTGGAAGGAGGGTAAGGACCCTGATGCAGGTTGTGCGATCTGATGGTGGAGTTGTCATTGGAAAATCAACAGATGAGAAACAGCTAGTAGTAAAAGGACTTCCCCCTGCTCCTCTTACAACTTTTGTAGAAGTTTTTGGTATTGTTAACAGTGATAAGTCCATTGCTGCTGAGATATGGACCAATTTTGGTGATTCCATTGATATGATCAGCTACAATAAGCTTTGTCAGCTTGCAAATGGAGAACTTAAATACCTGTTCCTGTGA 321 0.4112 MDMSNPAAFVNAELLHFYVGRRVRTLMQVVRSDGGVVIGKSTDEKQLVVKGLPPAPLTTFVEVFGIVNSDKSIAAEIWTNFGDSIDMISYNKLCQLANGELKYLFL 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02542 106 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 106 - -
Viun1g02542 106 CDD RPA3 6 98 - -
Viun1g02542 106 SUPERFAMILY Nucleic acid-binding proteins 3 98 IPR012340 -
Viun1g02542 106 Gene3D - 3 106 IPR012340 -
Viun1g02542 106 Pfam Replication factor A protein 3 3 99 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02542 Viun-Chr1 35642074 35644182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02542 1 106 Core DNA Replication Machinery Family AT4G18590 61.321 3.80e-48 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02542 K10740 - gmx:100306641 185.652