Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02540 ATGCAAAAAATGCCTGGGACAGGGCATAGAGATGTATTGGTCAAAAATCCAGAGTCACCAGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAAGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGAAGTTGAGTACGAAGAGGTAGAGGAGGAGGAAGAAGTAGAAGTGGAAGAAGAAGAGGAGGAGGAGGAGGAAGAGGAAGGGGAGGAGGAAGAAGAGATTAAGCCTTCAGATGTTGAAGATGAGACAGGAGTGGAAGACACTGAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGGGTCCGAGGTTTACATTGGGGGCATTCCTCCAAAAGTTTCTGAAGAAGATTTGAACGGATTTTGTCAATCTGTGGGAGAAGTTTCAGAGGTTAGGATAATGAAGGGCAAAGAATCAGGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTAAGGAGCTGAACAACACTGAACTTAAGGGAAAAAAAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTGTTCATTGGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGGAGAAAGTTGTTTCAGAGATTGGCCCTGGAATCATTTCTGTGGAACTATTGAAGGACCCACAGATTTCTGGCCGTAACCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAAACTTTAAACTTGGCAGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATGAATCATCTGCAAACTCTCAGGTAAAAGCATTGTATGTAAAGAATCTTCCAGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTGTCCCTTCTGCTAAAGCTGGCCAAGAAAAGAGCAGATATGGTTTTGTTCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCATTAAAGAACACAGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCACTAGCAAAGCCACAAGCAGATCAGAAGTCATCTGGGGCAGCAAATCAACAGAAGTCAGCCTTACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGATTGGTGGTGCTATAGGTGCAGGATATGGTGCTGCTGGCTTTGCGCAACCACTGATGTATGGTCCTGGACCAACCCCTCCTGGCATGACAATGATGCCGATGCTTTTACCAGATGGAAGGATTGGATATGTATTGCAACAACCAGGGTTTCAACAGCATGCTCCGATGCTGGAATCCCAACATAGGAAGAGGGGCGGCGGTAGCTCAAGTGGGAAACGCAGTAATGATAATAACCGCAATAGTGGCGGTGGCCGATATCATCCCTATTAA 1461 0.4353 MQKMPGTGHRDVLVKNPESPEGNSEPEKPTDSDEQVDFDGDNDQEETMEEEEVEYEEVEEEEEVEVEEEEEEEEEEEGEEEEEIKPSDVEDETGVEDTEDEKKKHAELLALPPHGSEVYIGGIPPKVSEEDLNGFCQSVGEVSEVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELKGKKIKCSTSQAKHRLFIGNVPRNWTEENMEKVVSEIGPGIISVELLKDPQISGRNRGFAFIEYYNNACAEYSRQKMSNSNFKLGSNAPTVSWADPRNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGAANQQKSALLPTYPPHLGYGMIGGAIGAGYGAAGFAQPLMYGPGPTPPGMTMMPMLLPDGRIGYVLQQPGFQQHAPMLESQHRKRGGGSSSGKRSNDNNRNSGGGRYHPY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02540 486 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 197 277 - -
Viun1g02540 486 SMART rrm2_1 291 364 IPR003954 GO:0003676
Viun1g02540 486 SMART rrm2_1 117 190 IPR003954 GO:0003676
Viun1g02540 486 MobiDBLite consensus disorder prediction 21 35 - -
Viun1g02540 486 MobiDBLite consensus disorder prediction 36 96 - -
Viun1g02540 486 CDD RRM_SF 118 190 - -
Viun1g02540 486 Gene3D - 197 277 IPR012677 -
Viun1g02540 486 MobiDBLite consensus disorder prediction 454 486 - -
Viun1g02540 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Viun1g02540 486 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 24 477 - -
Viun1g02540 486 Coils Coil 41 84 - -
Viun1g02540 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Viun1g02540 486 MobiDBLite consensus disorder prediction 1 110 - -
Viun1g02540 486 SMART rrm1_1 117 190 IPR000504 GO:0003723
Viun1g02540 486 SMART rrm1_1 197 274 IPR000504 GO:0003723
Viun1g02540 486 SMART rrm1_1 291 364 IPR000504 GO:0003723
Viun1g02540 486 SUPERFAMILY RNA-binding domain, RBD 195 280 IPR035979 GO:0003676
Viun1g02540 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 278 IPR000504 GO:0003723
Viun1g02540 486 Gene3D - 34 196 IPR012677 -
Viun1g02540 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Viun1g02540 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 361 IPR000504 GO:0003723
Viun1g02540 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 264 IPR000504 GO:0003723
Viun1g02540 486 Gene3D - 280 388 IPR012677 -
Viun1g02540 486 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 279 388 - -
Viun1g02540 486 SUPERFAMILY RNA-binding domain, RBD 113 370 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02540 Viun-Chr1 35630418 35635515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02540 118 440 Eukaryotic Initiation Factors Gene Family AT1G71770 24.672 9.46e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02540 K13161 - gmx:100798476 642.884