Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun1g02539 | ATGCAAAAAATGCCTGGGACAGGGCATAGAGATGTATTGGTCAAAAATCCAGAGTCACCAGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAAGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGAAGTTGAGTACGAAGAGGTAGAGGAGGAGGAAGAAGTAGAAGTGGAAGAAGAAGAGGAGGAGGAGGAGGAAGAGGAAGGGGAGGAGGAAGAAGAGATTAAGCCTTCAGATGTTGAAGATGAGACAGGAGTGGAAGACACTGAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGGGTCCGAGGTTTACATTGGGGGCATTCCTCCAAAAGTTTCTGAAGAAGATTTGAACGGATTTTGTCAATCTGTGGGAGAAGTTTCAGAGGTTAGGATAATGAAGGGCAAAGAATCAGGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTAAGGAGCTGAACAACACTGAACTTAAGGGAAAAAAAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTGTTCATTGGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGGAGAAAGTTGTTTCAGAGATTGGCCCTGGAATCATTTCTGTGGAACTATTGAAGGACCCACAGATTTCTGGCCGTAACCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAAACTTTAAACTTGGCAGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATGAATCATCTGCAAACTCTCAGGTAAAAGCATTGTATGTAAAGAATCTTCCAGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTGTCCCTTCTGCTAAAGCTGGCCAAGAAAAGAGCAGATATGGTTTTGTTCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCATTAAAGAACACAGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCACTAGCAAAGCCACAAGCAGATCAGAAGTCATCTGGGGCAGCAAATCAACAGAAGTCAGCCTTACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGATTGGTGGTGCTATAGGTGCAGGATATGGTGCTGCTGGCTTTGCGCAACCACTGATGTATGGTCCTGGACCAACCCCTCCTGGCATGACAATGATGCCGATGCTTTTACCAGATGGAAGGATTGGATATGTATTGCAACAACCAGGGTTTCAACAGCATGCTCCGATGCTGGAATCCCAACATAGGAAGAGGGGCGGCGGTAGCTCAAGTGGGAAACGCAGTAATGATAATAACCGCAATAGTGGCGGTGGCCGATATCATCCCTATTAA | 1461 | 0.4353 | MQKMPGTGHRDVLVKNPESPEGNSEPEKPTDSDEQVDFDGDNDQEETMEEEEVEYEEVEEEEEVEVEEEEEEEEEEEGEEEEEIKPSDVEDETGVEDTEDEKKKHAELLALPPHGSEVYIGGIPPKVSEEDLNGFCQSVGEVSEVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELKGKKIKCSTSQAKHRLFIGNVPRNWTEENMEKVVSEIGPGIISVELLKDPQISGRNRGFAFIEYYNNACAEYSRQKMSNSNFKLGSNAPTVSWADPRNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGAANQQKSALLPTYPPHLGYGMIGGAIGAGYGAAGFAQPLMYGPGPTPPGMTMMPMLLPDGRIGYVLQQPGFQQHAPMLESQHRKRGGGSSSGKRSNDNNRNSGGGRYHPY | 486 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun1g02539 | 486 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 197 | 277 | - | - | |
| Viun1g02539 | 486 | SMART | rrm2_1 | 291 | 364 | IPR003954 | GO:0003676 | |
| Viun1g02539 | 486 | SMART | rrm2_1 | 117 | 190 | IPR003954 | GO:0003676 | |
| Viun1g02539 | 486 | MobiDBLite | consensus disorder prediction | 21 | 35 | - | - | |
| Viun1g02539 | 486 | MobiDBLite | consensus disorder prediction | 36 | 96 | - | - | |
| Viun1g02539 | 486 | CDD | RRM_SF | 118 | 190 | - | - | |
| Viun1g02539 | 486 | Gene3D | - | 197 | 277 | IPR012677 | - | |
| Viun1g02539 | 486 | MobiDBLite | consensus disorder prediction | 454 | 486 | - | - | |
| Viun1g02539 | 486 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 290 | 368 | IPR000504 | GO:0003723 | |
| Viun1g02539 | 486 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 24 | 477 | - | - | |
| Viun1g02539 | 486 | Coils | Coil | 41 | 84 | - | - | |
| Viun1g02539 | 486 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 116 | 194 | IPR000504 | GO:0003723 | |
| Viun1g02539 | 486 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
| Viun1g02539 | 486 | SMART | rrm1_1 | 117 | 190 | IPR000504 | GO:0003723 | |
| Viun1g02539 | 486 | SMART | rrm1_1 | 197 | 274 | IPR000504 | GO:0003723 | |
| Viun1g02539 | 486 | SMART | rrm1_1 | 291 | 364 | IPR000504 | GO:0003723 | |
| Viun1g02539 | 486 | SUPERFAMILY | RNA-binding domain, RBD | 195 | 280 | IPR035979 | GO:0003676 | |
| Viun1g02539 | 486 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 196 | 278 | IPR000504 | GO:0003723 | |
| Viun1g02539 | 486 | Gene3D | - | 34 | 196 | IPR012677 | - | |
| Viun1g02539 | 486 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 118 | 188 | IPR000504 | GO:0003723 | |
| Viun1g02539 | 486 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 292 | 361 | IPR000504 | GO:0003723 | |
| Viun1g02539 | 486 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 198 | 264 | IPR000504 | GO:0003723 | |
| Viun1g02539 | 486 | Gene3D | - | 280 | 388 | IPR012677 | - | |
| Viun1g02539 | 486 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 279 | 388 | - | - | |
| Viun1g02539 | 486 | SUPERFAMILY | RNA-binding domain, RBD | 113 | 370 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun1g02539 | Viun-Chr1 | 35630418 | 35635563 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun1g02539 | 118 | 440 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 24.672 | 9.46e-16 | 78.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun1g02539 | K13161 | - | gmx:100798476 | 642.884 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun1g02539 | 1 | 35630418 | 35635563 | Viun1g02539 | 1 | 35630418 | 35635563 | ECH | |
| Viun1g02539 | 1 | 35630418 | 35635563 | Viun7g01586 | 7 | 20533969 | 20542905 | PCT |