Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02494 ATGGACTTGCGTCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACACCCACAAACACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCAGCTACTAACAGATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATCTTCAGGTACATGTTAGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTTTGCTGCAATCTGGGTATTGGGGTAGGGGAGCGATGGATCCAGAACCAGGGCGGTGCCGGAGAACTGACGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGCGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAAGTAGTGCTAATTGCGGCGGTGGTGGTGGTGGTGGTGCCGGATCTCTAGGATTAGGTGCTTCATCTTCCATTTCTTCACCGCCGCTAGCTTCTGCTTCTCTGAAATCCCCTTTTGATCTTCTTCATCTTAGTGAACGCTCCTCTGGGACCAAGAATGAAGAGTTTGAAAACGAAGATCATGTGGGTGGGGATGGCAGAGCAGGTGGGCATATGCTGAGGCATTTTTTCGATGATTGGCCAAGATCACTGCAAGACTCTGACAATGTTGAAAACAATGCTGCCCGGATCAACTCCGCCACATGCCTCTCTATTTCCATGCCCGGAAATGCTTCCTCAGATGTCTCTTTGAAATTGTCCACGGGCTATGGGGACGACCCGGGCCCAACAGATCACAATGTCAATCTCGGCCCCGACCAACTGCAGTTGAATTGGGCCGGGGGGTGGGCCGGAGGTGGTCAAGTGGCTTCCATGGGTGGGCCACTTGCTGAGGCACTCAGATCATCTACTTCAACTTCATCTCCTACTAGCGTTTTGCATCACTTGCCTCCTCCTGGTTCTGGATCTGAGACCAGCTTTGTTAGCAACTGA 1152 0.5113 MDLRLKQWRNQHESEEQHSTKMPKLLPESHQHPQTQSSASALPLFVPEPNSKVSTLSDSTLAATNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPSSANCGGGGGGGAGSLGLGASSSISSPPLASASLKSPFDLLHLSERSSGTKNEEFENEDHVGGDGRAGGHMLRHFFDDWPRSLQDSDNVENNAARINSATCLSISMPGNASSDVSLKLSTGYGDDPGPTDHNVNLGPDQLQLNWAGGWAGGGQVASMGGPLAEALRSSTSTSSPTSVLHHLPPPGSGSETSFVSN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02494 383 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun1g02494 383 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun1g02494 383 MobiDBLite consensus disorder prediction 171 198 - -
Viun1g02494 383 MobiDBLite consensus disorder prediction 351 367 - -
Viun1g02494 383 MobiDBLite consensus disorder prediction 351 383 - -
Viun1g02494 383 MobiDBLite consensus disorder prediction 1 38 - -
Viun1g02494 383 MobiDBLite consensus disorder prediction 305 326 - -
Viun1g02494 383 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun1g02494 383 PANTHER GROWTH-REGULATING FACTOR 5 37 301 IPR031137 GO:0005634|GO:0006351|GO:0032502
Viun1g02494 383 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Viun1g02494 383 Pfam WRC 142 184 IPR014977 -
Viun1g02494 383 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02494 Viun-Chr1 35315529 35318788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02494 1 369 GRF Transcription Factor Family AT3G52910 52.062 6.73e-96 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Viun1g02494 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02494 - - gmx:100814842 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02494 1 35315529 35318788 Viun1g02494 1 35315529 35318788 ECH
Viun1g02494 1 35315529 35318788 Viun7g00880 7 8257724 8260100 PCT