Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02490 ATGCGTTCCACCAACAACACCACGTGTGCTGCATCAAGCACCGGAGCCTCTAACGGTAGTAACACAGGGCGCCACCCTGTGTACCGCGGAGTGAGGCGTAGGAGCAGTGGGAAATGGGTTTCTGAAATCCGTGAGCCCAGAAAACCTAACAGGATTTGGTTAGGGACATTTGCCACCCCGGAAATGGCGGCTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGGAAGGATGCCGAACTCAACTTCCCTGACTCCGCCTCTTCTCTTCCCGTCCCTGCTTCGTCCGCTGCTCGTGACATTCAGATGGCGGCGGCCAGTGCTGCCGCCGCCGTCGGAGCGGCTAATGATGCACTGAGTGAAGGAAGCCGAGGAGGGAATGTTTCGGTTTCAATGGCGCAAGAGTTTTCTGGGGGAAACTTAAACCACTTTGTGGATGAGGACTTGATCTTCGACATGCCCAATATTCTGGTCAACATGGCTGAAGGAATGCTACTCAGCCCTCCTCGTTTTGACAATTTTTCTGCTACGGATTATGACTACATGGATGAAAATCCTAATCTCTGGGGGTTCCCTTACTAG 582 0.5326 MRSTNNTTCAASSTGASNGSNTGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPDSASSLPVPASSAARDIQMAAASAAAAVGAANDALSEGSRGGNVSVSMAQEFSGGNLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDNFSATDYDYMDENPNLWGFPY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02490 193 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Viun1g02490 193 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Viun1g02490 193 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Viun1g02490 193 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Viun1g02490 193 MobiDBLite consensus disorder prediction 1 36 - -
Viun1g02490 193 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Viun1g02490 193 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Viun1g02490 193 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Viun1g02490 193 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Viun1g02490 193 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Viun1g02490 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 22 189 IPR045277 GO:0003700
Viun1g02490 193 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02490 Viun-Chr1 35252260 35253412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02490 21 192 AP2-EREBP Transcription Factor Family AT2G36450 64.045 4.46e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun1g02490 AP2 7.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02490 - - gmx:100813781 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02490 1 35252260 35253412 Viun1g02490 1 35252260 35253412 ECH
Viun1g02490 1 35252260 35253412 Viun7g00877 7 8159009 8160308 PCT
Viun7g00878 7 8200245 8201082 Viun1g02490 1 35252260 35253412 PCT