Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02489 ATGGAAATGGAGGACCATCATCATCACCATCATCATCAACACCATGAACAGCACCACCACCACCAGCAACAGTATGCCATCACTGATCTCAGGCAACTCATGAACGGCCCGAGGTCCACCCATTTCCCCACCATGCCGCCGCAGCCCAAGCCGGACCTCTTCCCCGCCGGCCACCCCAACCTGGCCCCCTCGCAGCACTTCGAGATGATGATGTTTGGTCGTCAAGTGGCGGACATAATGCCCCGGTGTCTTCATGACTTTGCCTCCACCGATTCCGCCACCAATAATAACAACACGAGCATCGCTGCTGCCACTCCCACCACCACCACTAGTGCCTCCACTCCACCGCTTAGTTGCTTAGAGGGTGAGACCGCAGGATGCATCGGTGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACACTCACTCTTCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGTCCCCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGCGGGAAGAAGTGCCGGGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAGACAAAGGAGGGAAAAGCAGGAAGACAGGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGCGAAAACAGTAACCAAACCTCGGTACCAGAAACCAATTTCGGTAGTGGCAGCCTTCGTTTCCACTCAAACAACCACAACCCTTCTCAAACAAATCAAGAAATGTTTCACTCCCAGAAGCATTGCGATAGCCTAAGTCTCACCAACTCCACTGATTTGGATACGTCATCATCGGATGACAACGATCAGAATAGCACTGGGGGCCTCAAGGACAATGACTCCACGGAGAAGAGGAGAAAGAGGTTGAGCGGAAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCGCAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACCAAGACACTGGAGCAGAAAGAAAAGGAGAGGGTTCTAAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGTAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCCTTACAAAAACTAACAGGAAATGAGATGATAAAGAGTACTCAATCTCCTGAGGGTGTAATGGTAACTGGAATTCAGAACCACAGCGAAAACCTGAATGAAGATGGGAGTGAAATACTAAATAGTACTACTGCCAGAGGTGCTGAAAGCTGGCCAGAATCTGAGATTACCAGGCTTCAACAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCAGAAGAGTTTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTAGTGTTCAAAGAGAAATGGGAAAGTACCAGAAACTACGCAAGGAATGCTAAAGATGGAAACAAGAAGCGCAAGGAAGACTCTAGAGGTTGTTTCTACTTCGATAACAGCGAACAGTCTTCCCTGTATAACCAAGGAGGAACCTATTGTGATATTAATGATCAAAGGCACGAGAGGAGGCTGCAAAATGATGGTTCTTCGCCTTCAAATTCAAATGTTGCTGGTGATAACTGTTTTCCCTTCTTGATGACTGAGGGTGCAAATTTGTGGGAGAACTATAGCTTAAAGGTTAATAAAGCAAGCCAAAACCAGTGA 1761 0.4708 MEMEDHHHHHHHQHHEQHHHHQQQYAITDLRQLMNGPRSTHFPTMPPQPKPDLFPAGHPNLAPSQHFEMMMFGRQVADIMPRCLHDFASTDSATNNNNTSIAAATPTTTTSASTPPLSCLEGETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQTSVPETNFGSGSLRFHSNNHNPSQTNQEMFHSQKHCDSLSLTNSTDLDTSSSDDNDQNSTGGLKDNDSTEKRRKRLSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAVRLEREHKFWAKERAWIEARDAALMEALQKLTGNEMIKSTQSPEGVMVTGIQNHSENLNEDGSEILNSTTARGAESWPESEITRLQQLRAEMETRYMQSGCSEEFMWEEIATKMACFGYERSALVFKEKWESTRNYARNAKDGNKKRKEDSRGCFYFDNSEQSSLYNQGGTYCDINDQRHERRLQNDGSSPSNSNVAGDNCFPFLMTEGANLWENYSLKVNKASQNQ 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02489 586 MobiDBLite consensus disorder prediction 91 116 - -
Viun1g02489 586 CDD GT1 136 201 - -
Viun1g02489 586 Gene3D - 137 199 - -
Viun1g02489 586 Gene3D - 436 498 - -
Viun1g02489 586 Pfam Myb/SANT-like DNA-binding domain 435 518 IPR044822 -
Viun1g02489 586 Pfam Myb/SANT-like DNA-binding domain 136 222 IPR044822 -
Viun1g02489 586 ProSiteProfiles Myb-like domain profile. 129 194 IPR001005 -
Viun1g02489 586 Coils Coil 326 353 - -
Viun1g02489 586 MobiDBLite consensus disorder prediction 226 305 - -
Viun1g02489 586 PANTHER FI21293P1 68 550 - -
Viun1g02489 586 MobiDBLite consensus disorder prediction 226 293 - -
Viun1g02489 586 CDD GT1 436 500 - -
Viun1g02489 586 FunFam Trihelix transcription factor GT-2 436 498 - -
Viun1g02489 586 FunFam trihelix transcription factor PTL-like 137 199 - -
Viun1g02489 586 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02489 Viun-Chr1 35229979 35233613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02489 24 581 Trihelix Transcription Factor Family AT5G03680 45.771 1.80e-146 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun1g02489 Myb_DNA-bind_4 4.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02489 - - gmx:100813245 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02489 1 35229979 35233613 Viun1g02489 1 35229979 35233613 ECH
Viun1g02489 1 35229979 35233613 Viun7g00875 7 8032872 8036447 PCT