Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02483 ATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAGCTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAATGATTTGCAGTCACAACGCCCTCCTCACAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAGCTTTGTTAACCTCAAATGAGGATTCAGAGAGGCCAAATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAAACAGATGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAACGGTTTCAGTCTCAAGCGTAGTCTTTCAACTCGTGAAGCACCAAAGTCCATAAATTTGAAAGCACAACGTCGGCCAGGCCTAACTTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCCGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCTAATGTGTCCAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTACATATTCAACACCCTTATGGGGTAAAGGTTGATAAGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAGTTGCAGAAGCATCACACAATTGATAAGTTGAATCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTATCAAGAAGGGGAACCAGTCTTTTACGTCAAAGGCAATAGTAGGATTGTCCAAAACTGTAGAGCCACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCACCTTTGCATCGACAGTCTCCATCACTGCCAGGAGCAGTATACCACCCTCATTCAATGCAAAATTTGCCTGAGCAAGAAATGCCCCAGGATCTCAAAACATCTCAATTTTTGGGAGGTCCAACTAGTCAGCCCATTAGAGATCGCTCACCTACCCTTCATCCCGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAACCAAAGCTTCAGCAACAGCAGCTCGACTCTTCTCAGGCTGAAGTTTTTGCCAAAACTAAGCTGCCGCCCCTGTCTAAAGTTTCTTTAACCAAAGAAGTTTCAGAACAGTCAACCAAGAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCTGGCAGGTCTTCTCCTGCAACATTAATTTCTTCGGGGTCTGCAGTGGCATCAACATCTTTATTGGATCCTCTGCACAAAGATTCATCTTCGCTGCCCAAAAAACCTCAAGGAAAGGCTGGACAACCGCCACAAAGGCCTTCTACTCAGCCACCTGCTTCCTCTAATGTGAATGCTGCAAAAAGTAATGTAAACCCAATCGCAAACCTTTTAAGTTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACTGAATCACCGACTATGGTACCAAGCGAGGTGCTGAAAGGATCCAGAGATAAAACTGTAAACATCATTACCAGTAGCTCTTTCCCAGTTACATCAGTTTCTGATTCCGCAGCTGTCCCAGCATCATCTACCACCAGAGATGAGGAAGACGCTGCTACAAAATCTTCTCTTCCCTCAGCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCCCTCATCATTGCAAAAGTTGCGGTATTAGGTTTAAACCAGAAGAACAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAGCATGGTCCAATTAAAGTATCCAGAAGTTGGTATGCGAAGTCAAGTGATTGGATTGCTGGCAAGGTAGACTATTCATCTGAGCTTGAGTTTACCGACTCTGTTGTTGTACACGACAAAGAAACAGAAAGCAGTCATTTGGAAACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTATACTGTCACGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTGCTCGGATTACAATGATGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATGTTCACCAATTTGGGTAATGATTAA 2550 0.4333 MKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRNDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLTSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSTREAPKSINLKAQRRPGLTLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHIQHPYGVKVDKEISTVKKQLPGFGGHPPSSWQLQKHHTIDKLNLKPGYSEGFVSTISGLPANASSLPIKKGNQSFTSKAIVGLSKTVEPQFDSGETESPSGQSPLHRQSPSLPGAVYHPHSMQNLPEQEMPQDLKTSQFLGGPTSQPIRDRSPTLHPVVQVGNMRRTQEKDMQGTFQPKLQQQQLDSSQAEVFAKTKLPPLSKVSLTKEVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLISSGSAVASTSLLDPLHKDSSSLPKKPQGKAGQPPQRPSTQPPASSNVNAAKSNVNPIANLLSSLVAKGLISAETESPTMVPSEVLKGSRDKTVNIITSSSFPVTSVSDSAAVPASSTTRDEEDAATKSSLPSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFPHHCKSCGIRFKPEEQYKRHLEWHATREHGPIKVSRSWYAKSSDWIAGKVDYSSELEFTDSVVVHDKETESSHLETMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCSDYNDEMESRNVGPIIHAKCLSENSMFTNLGND 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02483 849 ProSitePatterns Zinc finger C2H2 type domain signature. 705 725 IPR013087 -
Viun1g02483 849 MobiDBLite consensus disorder prediction 359 379 - -
Viun1g02483 849 ProSiteProfiles Zinc finger C2H2 type domain profile. 703 730 IPR013087 -
Viun1g02483 849 MobiDBLite consensus disorder prediction 405 421 - -
Viun1g02483 849 MobiDBLite consensus disorder prediction 520 535 - -
Viun1g02483 849 MobiDBLite consensus disorder prediction 359 391 - -
Viun1g02483 849 MobiDBLite consensus disorder prediction 639 667 - -
Viun1g02483 849 MobiDBLite consensus disorder prediction 547 583 - -
Viun1g02483 849 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 842 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Viun1g02483 849 MobiDBLite consensus disorder prediction 405 427 - -
Viun1g02483 849 MobiDBLite consensus disorder prediction 503 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02483 Viun-Chr1 35182374 35186936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02483 677 839 C2H2 Transcription Factor Family AT4G04885 36.686 6.19e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02483 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02483 K14400 - gmx:100811629 1257.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02483 1 35182374 35186936 Viun1g02483 1 35182374 35186936 ECH