Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02482 ATGGAGAGTACGCGCAGAACCTTGGATAGATCTAGAGAACTGGGTTCCAAGAAGCCTCGATTGATCGATGAACTCAGTGCCCGACAGTTACCTCAACGACAGCAAGGGTCCGGGGTAGTTGCTTCCTTGGTGTCTGCAAGGGCTCGAGTAAATGATAGGGACTCCGAAAGCAGCGAATCCGGTCGCGGGGGTGGGTACCAGCCTCAGCCGCAGCCTCACCATGAGCTTGTGACTCAGTATAAGACCGCTCTTGCTGAGCTTACTTTCAATTCAAAGCCTATAATTACGAACTTGACTATTATAGCCGGAGAGAATCAGTCTGCTGCCAAGGCAATTGCCGACACTGTTTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCGTCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGGGATTATATAAAGTATTTTGCTGTCAGATTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAGCTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAATGATTTGCAGTCACAACGCCCTCCTCACAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAGCTTTGTTAACCTCAAATGAGGATTCAGAGAGGCCAAATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAAACAGATGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAACGGTTTCAGTCTCAAGCGTAGTCTTTCAACTCGTGAAGCACCAAAGTCCATAAATTTGAAAGCACAACGTCGGCCAGGCCTAACTTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCCGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCTAATGTGTCCAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTACATATTCAACACCCTTATGGGGTAAAGGTTGATAAGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAGTTGCAGAAGCATCACACAATTGATAAGTTGAATCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTATCAAGAAGGGGAACCAGTCTTTTACGTCAAAGGCAATAGTAGGATTGTCCAAAACTGTAGAGCCACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCACCTTTGCATCGACAGTCTCCATCACTGCCAGGAGCAGTATACCACCCTCATTCAATGCAAAATTTGCCTGAGCAAGAAATGCCCCAGGATCTCAAAACATCTCAATTTTTGGGAGGTCCAACTAGTCAGCCCATTAGAGATCGCTCACCTACCCTTCATCCCGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAACCAAAGCTTCAGCAACAGCAGCTCGACTCTTCTCAGGCTGAAGTTTTTGCCAAAACTAAGCTGCCGCCCCTGTCTAAAGTTTCTTTAACCAAAGAAGTTTCAGAACAGTCAACCAAGAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCTGGCAGGTCTTCTCCTGCAACATTAATTTCTTCGGGGTCTGCAGTGGCATCAACATCTTTATTGGATCCTCTGCACAAAGATTCATCTTCGCTGCCCAAAAAACCTCAAGGAAAGGCTGGACAACCGCCACAAAGGCCTTCTACTCAGCCACCTGCTTCCTCTAATGTGAATGCTGCAAAAAGTAATGTAAACCCAATCGCAAACCTTTTAAGTTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACTGAATCACCGACTATGGTACCAAGCGAGGTGCTGAAAGGATCCAGAGATAAAACTGTAAACATCATTACCAGTAGCTCTTTCCCAGTTACATCAGTTTCTGATTCCGCAGCTGTCCCAGCATCATCTACCACCAGAGATGAGGAAGACGCTGCTACAAAATCTTCTCTTCCCTCAGCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCCCTCATCATTGCAAAAGTTGCGGTATTAGGTTTAAACCAGAAGAACAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAGCATGGTCCAATTAAAGTATCCAGAAGTTGGTATGCGAAGTCAAGTGATTGGATTGCTGGCAAGGTAGACTATTCATCTGAGCTTGAGTTTACCGACTCTGTTGTTGTACACGACAAAGAAACAGAAAGCAGTCATTTGGAAACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTATACTGTCACGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTGCTCGGATTACAATGATGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATGTTCACCAATTTGGGTAATGATTAA 3066 0.4403 MESTRRTLDRSRELGSKKPRLIDELSARQLPQRQQGSGVVASLVSARARVNDRDSESSESGRGGGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIADTVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRNDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLTSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSTREAPKSINLKAQRRPGLTLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHIQHPYGVKVDKEISTVKKQLPGFGGHPPSSWQLQKHHTIDKLNLKPGYSEGFVSTISGLPANASSLPIKKGNQSFTSKAIVGLSKTVEPQFDSGETESPSGQSPLHRQSPSLPGAVYHPHSMQNLPEQEMPQDLKTSQFLGGPTSQPIRDRSPTLHPVVQVGNMRRTQEKDMQGTFQPKLQQQQLDSSQAEVFAKTKLPPLSKVSLTKEVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLISSGSAVASTSLLDPLHKDSSSLPKKPQGKAGQPPQRPSTQPPASSNVNAAKSNVNPIANLLSSLVAKGLISAETESPTMVPSEVLKGSRDKTVNIITSSSFPVTSVSDSAAVPASSTTRDEEDAATKSSLPSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFPHHCKSCGIRFKPEEQYKRHLEWHATREHGPIKVSRSWYAKSSDWIAGKVDYSSELEFTDSVVVHDKETESSHLETMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCSDYNDEMESRNVGPIIHAKCLSENSMFTNLGND 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02482 1021 CDD CID_Pcf11 77 187 IPR047415 -
Viun1g02482 1021 ProSiteProfiles Zinc finger C2H2 type domain profile. 875 902 IPR013087 -
Viun1g02482 1021 MobiDBLite consensus disorder prediction 577 599 - -
Viun1g02482 1021 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 58 1014 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Viun1g02482 1021 MobiDBLite consensus disorder prediction 675 707 - -
Viun1g02482 1021 ProSitePatterns Zinc finger C2H2 type domain signature. 877 897 IPR013087 -
Viun1g02482 1021 MobiDBLite consensus disorder prediction 692 707 - -
Viun1g02482 1021 MobiDBLite consensus disorder prediction 1 24 - -
Viun1g02482 1021 MobiDBLite consensus disorder prediction 719 755 - -
Viun1g02482 1021 Gene3D - 67 197 IPR008942 -
Viun1g02482 1021 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Viun1g02482 1021 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Viun1g02482 1021 SUPERFAMILY ENTH/VHS domain 72 200 IPR008942 -
Viun1g02482 1021 MobiDBLite consensus disorder prediction 531 551 - -
Viun1g02482 1021 MobiDBLite consensus disorder prediction 577 593 - -
Viun1g02482 1021 MobiDBLite consensus disorder prediction 531 563 - -
Viun1g02482 1021 MobiDBLite consensus disorder prediction 811 839 - -
Viun1g02482 1021 SMART 558neu5 75 197 IPR006569 -
Viun1g02482 1021 Pfam CID domain 81 190 IPR006569 -
Viun1g02482 1021 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02482 Viun-Chr1 35180869 35186936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02482 29 234 C2H2 Transcription Factor Family AT4G04885 51.942 1.32e-54 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02482 CID 1.4e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02482 K14400 - gmx:100788958 1502.26