Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun1g02480 | ATGGAGAGTACGCGCAGAACCTTGGATAGATCTAGAGAACTGGGTTCCAAGAAGCCTCGATTGATCGATGAACTCAGTGCCCGACAGTTACCTCAACGACAGCAAGGGTCCGGGGTAGTTGCTTCCTTGGTGTCTGCAAGGGCTCGAGTAAATGATAGGGACTCCGAAAGCAGCGAATCCGGTCGCGGGGGTGGGTACCAGCCTCAGCCGCAGCCTCACCATGAGCTTGTGACTCAGTATAAGACCGCTCTTGCTGAGCTTACTTTCAATTCAAAGCCTATAATTACGAACTTGACTATTATAGCCGGAGAGAATCAGTCTGCTGCCAAGGCAATTGCCGACACTGTTTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCGTCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGGGATTATATAAAGTATTTTGCTGTCAGATTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAGCTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAATGATTTGCAGTCACAACGCCCTCCTCACAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAGCTTTGTTAACCTCAAATGAGGATTCAGAGAGGCCAAATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAAACAGATGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAACGGTTTCAGTCTCAAGCGTAGTCTTTCAACTCGTGAAGCACCAAAGTCCATAAATTTGAAAGCACAACGTCGGCCAGGCCTAACTTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCCGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCTAATGTGTCCAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTACATATTCAACACCCTTATGGGGTAAAGGTTGATAAGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAGTTGCAGAAGCATCACACAATTGATAAGTTGAATCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTATCAAGAAGGGGAACCAGTCTTTTACGTCAAAGGCAATAGTAGGATTGTCCAAAACTGTAGAGCCACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCACCTTTGCATCGACAGTCTCCATCACTGCCAGGAGCAGTATACCACCCTCATTCAATGCAAAATTTGCCTGAGCAAGAAATGCCCCAGGATCTCAAAACATCTCAATTTTTGGGAGGTCCAACTAGTCAGCCCATTAGAGATCGCTCACCTACCCTTCATCCCGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAACCAAAGCTTCAGCAACAGCAGCTCGACTCTTCTCAGGCTGAAGTTTTTGCCAAAACTAAGCTGCCGCCCCTGTCTAAAGTTTCTTTAACCAAAGAAGTTTCAGAACAGTCAACCAAGAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCTGGCAGGTCTTCTCCTGCAACATTAATTTCTTCGGGGTCTGCAGTGGCATCAACATCTTTATTGGATCCTCTGCACAAAGATTCATCTTCGCTGCCCAAAAAACCTCAAGGAAAGGCTGGACAACCGCCACAAAGGCCTTCTACTCAGCCACCTGCTTCCTCTAATGTGAATGCTGCAAAAAGTAATGTAAACCCAATCGCAAACCTTTTAAGTTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACTGAATCACCGACTATGGTACCAAGCGAGGTGCTGAAAGGATCCAGAGATAAAACTGTAAACATCATTACCAGTAGCTCTTTCCCAGTTACATCAGTTTCTGATTCCGCAGCTGTCCCAGCATCATCTACCACCAGAGATGAGGAAGACGCTGCTACAAAATCTTCTCTTCCCTCAGCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCCCTCATCATTGCAAAAGTTGCGGTATTAGGTTTAAACCAGAAGAACAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAGCATGGTCCAATTAAAGTATCCAGAAGTTGGTATGCAAAGTCAAGTGATTGGATTGCTGGCAAGGTAGACTATTCATCTGAGCTTGAGTTTACCGACTCTGTTGTTGTACACGACAAAGAAACAGAAAGCAGTCATTTGGATACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTATACTGTCACGAAAGAAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTGCTCGGATTACAATGATGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATGTTCACCAATTTAGTAAGAGACCTGTTATGA | 3072 | 0.4398 | MESTRRTLDRSRELGSKKPRLIDELSARQLPQRQQGSGVVASLVSARARVNDRDSESSESGRGGGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIADTVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRNDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLTSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSTREAPKSINLKAQRRPGLTLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHIQHPYGVKVDKEISTVKKQLPGFGGHPPSSWQLQKHHTIDKLNLKPGYSEGFVSTISGLPANASSLPIKKGNQSFTSKAIVGLSKTVEPQFDSGETESPSGQSPLHRQSPSLPGAVYHPHSMQNLPEQEMPQDLKTSQFLGGPTSQPIRDRSPTLHPVVQVGNMRRTQEKDMQGTFQPKLQQQQLDSSQAEVFAKTKLPPLSKVSLTKEVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLISSGSAVASTSLLDPLHKDSSSLPKKPQGKAGQPPQRPSTQPPASSNVNAAKSNVNPIANLLSSLVAKGLISAETESPTMVPSEVLKGSRDKTVNIITSSSFPVTSVSDSAAVPASSTTRDEEDAATKSSLPSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFPHHCKSCGIRFKPEEQYKRHLEWHATREHGPIKVSRSWYAKSSDWIAGKVDYSSELEFTDSVVVHDKETESSHLDTMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCSDYNDEMESRNVGPIIHAKCLSENSMFTNLVRDLL | 1023 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun1g02480 | 1023 | CDD | CID_Pcf11 | 77 | 187 | IPR047415 | - | |
Viun1g02480 | 1023 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 58 | 1014 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Viun1g02480 | 1023 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 875 | 902 | IPR013087 | - | |
Viun1g02480 | 1023 | MobiDBLite | consensus disorder prediction | 577 | 599 | - | - | |
Viun1g02480 | 1023 | MobiDBLite | consensus disorder prediction | 675 | 707 | - | - | |
Viun1g02480 | 1023 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 877 | 897 | IPR013087 | - | |
Viun1g02480 | 1023 | MobiDBLite | consensus disorder prediction | 692 | 707 | - | - | |
Viun1g02480 | 1023 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Viun1g02480 | 1023 | MobiDBLite | consensus disorder prediction | 719 | 755 | - | - | |
Viun1g02480 | 1023 | FunFam | polyadenylation and cleavage factor homolog 4 | 69 | 197 | - | - | |
Viun1g02480 | 1023 | Gene3D | - | 67 | 197 | IPR008942 | - | |
Viun1g02480 | 1023 | ProSiteProfiles | CID domain profile. | 72 | 200 | IPR006569 | - | |
Viun1g02480 | 1023 | SUPERFAMILY | ENTH/VHS domain | 72 | 200 | IPR008942 | - | |
Viun1g02480 | 1023 | MobiDBLite | consensus disorder prediction | 531 | 551 | - | - | |
Viun1g02480 | 1023 | MobiDBLite | consensus disorder prediction | 577 | 593 | - | - | |
Viun1g02480 | 1023 | MobiDBLite | consensus disorder prediction | 811 | 839 | - | - | |
Viun1g02480 | 1023 | MobiDBLite | consensus disorder prediction | 531 | 563 | - | - | |
Viun1g02480 | 1023 | SMART | 558neu5 | 75 | 197 | IPR006569 | - | |
Viun1g02480 | 1023 | Pfam | CID domain | 81 | 190 | IPR006569 | - | |
Viun1g02480 | 1023 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun1g02480 | Viun-Chr1 | 35162788 | 35168654 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun1g02480 | 29 | 234 | C2H2 Transcription Factor Family | AT4G04885 | 51.942 | 1.25e-54 | 202 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Viun1g02480 | CID | 1.4e-12 | CL0020 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun1g02480 | K14400 | - | gmx:100788958 | 1508.43 |