Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02480 ATGGAGAGTACGCGCAGAACCTTGGATAGATCTAGAGAACTGGGTTCCAAGAAGCCTCGATTGATCGATGAACTCAGTGCCCGACAGTTACCTCAACGACAGCAAGGGTCCGGGGTAGTTGCTTCCTTGGTGTCTGCAAGGGCTCGAGTAAATGATAGGGACTCCGAAAGCAGCGAATCCGGTCGCGGGGGTGGGTACCAGCCTCAGCCGCAGCCTCACCATGAGCTTGTGACTCAGTATAAGACCGCTCTTGCTGAGCTTACTTTCAATTCAAAGCCTATAATTACGAACTTGACTATTATAGCCGGAGAGAATCAGTCTGCTGCCAAGGCAATTGCCGACACTGTTTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCGTCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGGGATTATATAAAGTATTTTGCTGTCAGATTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAGCTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAATGATTTGCAGTCACAACGCCCTCCTCACAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAGCTTTGTTAACCTCAAATGAGGATTCAGAGAGGCCAAATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAAACAGATGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAACGGTTTCAGTCTCAAGCGTAGTCTTTCAACTCGTGAAGCACCAAAGTCCATAAATTTGAAAGCACAACGTCGGCCAGGCCTAACTTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCCGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCTAATGTGTCCAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTACATATTCAACACCCTTATGGGGTAAAGGTTGATAAGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAGTTGCAGAAGCATCACACAATTGATAAGTTGAATCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTATCAAGAAGGGGAACCAGTCTTTTACGTCAAAGGCAATAGTAGGATTGTCCAAAACTGTAGAGCCACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCACCTTTGCATCGACAGTCTCCATCACTGCCAGGAGCAGTATACCACCCTCATTCAATGCAAAATTTGCCTGAGCAAGAAATGCCCCAGGATCTCAAAACATCTCAATTTTTGGGAGGTCCAACTAGTCAGCCCATTAGAGATCGCTCACCTACCCTTCATCCCGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAACCAAAGCTTCAGCAACAGCAGCTCGACTCTTCTCAGGCTGAAGTTTTTGCCAAAACTAAGCTGCCGCCCCTGTCTAAAGTTTCTTTAACCAAAGAAGTTTCAGAACAGTCAACCAAGAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCTGGCAGGTCTTCTCCTGCAACATTAATTTCTTCGGGGTCTGCAGTGGCATCAACATCTTTATTGGATCCTCTGCACAAAGATTCATCTTCGCTGCCCAAAAAACCTCAAGGAAAGGCTGGACAACCGCCACAAAGGCCTTCTACTCAGCCACCTGCTTCCTCTAATGTGAATGCTGCAAAAAGTAATGTAAACCCAATCGCAAACCTTTTAAGTTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACTGAATCACCGACTATGGTACCAAGCGAGGTGCTGAAAGGATCCAGAGATAAAACTGTAAACATCATTACCAGTAGCTCTTTCCCAGTTACATCAGTTTCTGATTCCGCAGCTGTCCCAGCATCATCTACCACCAGAGATGAGGAAGACGCTGCTACAAAATCTTCTCTTCCCTCAGCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCCCTCATCATTGCAAAAGTTGCGGTATTAGGTTTAAACCAGAAGAACAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAGCATGGTCCAATTAAAGTATCCAGAAGTTGGTATGCAAAGTCAAGTGATTGGATTGCTGGCAAGGTAGACTATTCATCTGAGCTTGAGTTTACCGACTCTGTTGTTGTACACGACAAAGAAACAGAAAGCAGTCATTTGGATACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTATACTGTCACGAAAGAAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTGCTCGGATTACAATGATGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATGTTCACCAATTTAGTAAGAGACCTGTTATGA 3072 0.4398 MESTRRTLDRSRELGSKKPRLIDELSARQLPQRQQGSGVVASLVSARARVNDRDSESSESGRGGGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIADTVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRNDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLTSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSTREAPKSINLKAQRRPGLTLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHIQHPYGVKVDKEISTVKKQLPGFGGHPPSSWQLQKHHTIDKLNLKPGYSEGFVSTISGLPANASSLPIKKGNQSFTSKAIVGLSKTVEPQFDSGETESPSGQSPLHRQSPSLPGAVYHPHSMQNLPEQEMPQDLKTSQFLGGPTSQPIRDRSPTLHPVVQVGNMRRTQEKDMQGTFQPKLQQQQLDSSQAEVFAKTKLPPLSKVSLTKEVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLISSGSAVASTSLLDPLHKDSSSLPKKPQGKAGQPPQRPSTQPPASSNVNAAKSNVNPIANLLSSLVAKGLISAETESPTMVPSEVLKGSRDKTVNIITSSSFPVTSVSDSAAVPASSTTRDEEDAATKSSLPSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFPHHCKSCGIRFKPEEQYKRHLEWHATREHGPIKVSRSWYAKSSDWIAGKVDYSSELEFTDSVVVHDKETESSHLDTMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCSDYNDEMESRNVGPIIHAKCLSENSMFTNLVRDLL 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02480 1023 CDD CID_Pcf11 77 187 IPR047415 -
Viun1g02480 1023 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 58 1014 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Viun1g02480 1023 ProSiteProfiles Zinc finger C2H2 type domain profile. 875 902 IPR013087 -
Viun1g02480 1023 MobiDBLite consensus disorder prediction 577 599 - -
Viun1g02480 1023 MobiDBLite consensus disorder prediction 675 707 - -
Viun1g02480 1023 ProSitePatterns Zinc finger C2H2 type domain signature. 877 897 IPR013087 -
Viun1g02480 1023 MobiDBLite consensus disorder prediction 692 707 - -
Viun1g02480 1023 MobiDBLite consensus disorder prediction 1 24 - -
Viun1g02480 1023 MobiDBLite consensus disorder prediction 719 755 - -
Viun1g02480 1023 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Viun1g02480 1023 Gene3D - 67 197 IPR008942 -
Viun1g02480 1023 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Viun1g02480 1023 SUPERFAMILY ENTH/VHS domain 72 200 IPR008942 -
Viun1g02480 1023 MobiDBLite consensus disorder prediction 531 551 - -
Viun1g02480 1023 MobiDBLite consensus disorder prediction 577 593 - -
Viun1g02480 1023 MobiDBLite consensus disorder prediction 811 839 - -
Viun1g02480 1023 MobiDBLite consensus disorder prediction 531 563 - -
Viun1g02480 1023 SMART 558neu5 75 197 IPR006569 -
Viun1g02480 1023 Pfam CID domain 81 190 IPR006569 -
Viun1g02480 1023 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02480 Viun-Chr1 35162788 35168654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02480 29 234 C2H2 Transcription Factor Family AT4G04885 51.942 1.25e-54 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02480 CID 1.4e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02480 K14400 - gmx:100788958 1508.43