Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02479 ATGAATCCAAGACAACATAGTCATCCTCAACTCGTACCAGAGGGACCAATTGGCTTCTCCACCACTCTCTTGCGTTCTCATGAAGCATTCCCCTCATGCTCTTTTCTTCCTCACACTTCACCTTCTCTTTCTGCTTCCTCAGCGTCTGAGAAGGTAATTACTTTGCCGCACCCACTTCAATGTTTGCAAGGGAATCCGGTTCCAGCATTTCTATCCAAGACTTTCGACCTCGTTGACGATCCATCGTTGGATCCGATCATATCATGGGCCTCAGCTGGTGTTAGTTTCGTCGTCTGGGATCCTACCCTGTTTGCAATACATGTCTTGCCCAGGAATTTCAAGCATAACAATTTCTCCACTTTTGTTCGCCAGTTAAATACCTATGGATTCCGCAAGATTGACTCTGATAAGTGGGAGTTTTTTAACGAAGCTTTTCAGCGAGGGAAGAGAAATCTTCTGAAGAACATCCAAAGGCGCAGACATCCTCATCGTGAAGCAGGTAAAGCTGGGCTTGAATTTGAAATAGAAAGACTAGGGAGGGAGAGGAGTGTGTTAATGCAAGAGGTGGTTGAGTTGCGGCAACAGCAGAGAACAACACTTCACCGTGCTAGACAAGTGAATCAGAGGCTCCAATCTGCAGAGTTAATACACAAACAAATGTTTTCTTTCCTGGCAAGGTTACTTGAAAACCCTGCTTTCTTAACATGCCTTCAGCATGAGAAGGAACAAAGAGATGAAGAAGTAGAATCTCCTAAAGTGAGAAGGAGCTTTGTCAAGCAGCACCAAGCACAAACAGGAATATCAGATTTTTTGAAGGAAGGACAGATTGTAAGTTACCAACCTGATTGGAGAGATGCAACCATCTCTTCCAAAATACCAGAAATGTGTTCAAATTACCTTTCACAGGCTTTGGCAGAAGAATGGAGTGAAGGTGCTGAGAATCTGGTGTCATATTCTGACACCATTGGGTTAAAGTCGTCAAGCTTTGGACTTGAAGATACCCTTTTGAAAGGGAAAAATGTCATGAACTCAAATCAAGATCTTCTTGCAGAGAAGATTGATTCTTTCCCAGAGGGTTTGACTAATGAGGCTGGATTTGCAGAGTTTTCACCTCTAGTTGGAACAGAAAGCATAATCAAGCCAGAAAATAAAGCTTTCATTTCAGTGGCTCTAGGGATGGACCTTGGGGAAATGGTATCAAGCATGAAGGACAAGAATTTAGATTCACAAGTGGTATGTCAGACATGTGGAACATTTGTTCACTGTGGGCAACACAGAGTTTCCGAACTGAAGATCCAGCACTGGATGAAGGAGAAAGTCTTGCTGGTCAGTGATCTTTCAAAAAACATGATAGAAATAAAAATGTGGATCCATTGCACTTCATTTGTTTCTGCACATATTGTGCTGTGTTAA 1413 0.4268 MNPRQHSHPQLVPEGPIGFSTTLLRSHEAFPSCSFLPHTSPSLSASSASEKVITLPHPLQCLQGNPVPAFLSKTFDLVDDPSLDPIISWASAGVSFVVWDPTLFAIHVLPRNFKHNNFSTFVRQLNTYGFRKIDSDKWEFFNEAFQRGKRNLLKNIQRRRHPHREAGKAGLEFEIERLGRERSVLMQEVVELRQQQRTTLHRARQVNQRLQSAELIHKQMFSFLARLLENPAFLTCLQHEKEQRDEEVESPKVRRSFVKQHQAQTGISDFLKEGQIVSYQPDWRDATISSKIPEMCSNYLSQALAEEWSEGAENLVSYSDTIGLKSSSFGLEDTLLKGKNVMNSNQDLLAEKIDSFPEGLTNEAGFAEFSPLVGTESIIKPENKAFISVALGMDLGEMVSSMKDKNLDSQVVCQTCGTFVHCGQHRVSELKIQHWMKEKVLLVSDLSKNMIEIKMWIHCTSFVSAHIVLC 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02479 470 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 58 258 IPR027725 -
Viun1g02479 470 Gene3D - 63 160 IPR036388 -
Viun1g02479 470 Pfam HSF-type DNA-binding 70 159 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02479 470 SMART hsfneu3 66 159 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02479 470 SUPERFAMILY "Winged helix" DNA-binding domain 65 159 IPR036390 -
Viun1g02479 470 Coils Coil 175 195 - -
Viun1g02479 470 PRINTS Heat shock factor (HSF) domain signature 108 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02479 470 PRINTS Heat shock factor (HSF) domain signature 70 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02479 470 PRINTS Heat shock factor (HSF) domain signature 121 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g02479 470 FunFam Heat stress transcription factor B-4 62 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02479 Viun-Chr1 35132921 35134983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02479 55 360 HSF AT5G03720 45.342 7.88e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun1g02479 HSF_DNA-bind 2.5e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02479 K09419 - gmx:100788429 483.026