Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02474 ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAAGTTGATCCAGGAGACGACAAGATTATCCACCTTTCAAATGCATGCCTGGGCGATGTGACTAAGGCTAAAGGAGGTGAATCGGTGGCCCTGAATGTGAAGTTTGGTAACCAGAAGCTTGTGCTTGGAACGCTTTCTACGGCTAAATTTCCTCAAATATCTTATGATTTGATATTTGAGAAGGAATTTGAGCTATCCCATAGTTGGAAAAATGGGAGTGTCTTCTTTACTGGATTTAAAGCTCAATCTCAGTCGGAGTCTGATAATGATGAAGATTCTGATGATCTTGATGAAGATATTCCAGTTAGTGCTGCCAATGGTAAACCTGAGTTTGAGGTGAAGCATGGTGTCAAACCTGATGAAGCTAAACAGAAGAAGACAACAGATCCAAAGAAGAATGAGAAGGTTAAGGAAAAGGATGCAAATGGTGAAGATGAAGATTCATCCGAATCTGATTCTGACGGTGATTCAAGTGAAGATAAGCCCACAGCAAATGGTGACATAGAAAGTAGCGAAGGTGATGAGGACAGTGATGATGAGGATGATGACGAGGATGAGGATGATGAAGAATCTGATGAGGAGACACCCAAGAAGATTGAAGCAGGCAAGAAGCGGAATATTGACTCTGCCAACAAAACAACTGTCCCTGTGAAGAAGGCAAAATTTGTTACTCCTCAGAAGCCTGATAGCAAGAACGTTGTTCATGTTGCAACGCCTCACCCTTCTAAGCAGGCTGGAAAAGCAATTGCAGATAACAAGCGGCAGACTCCGAAGTCAGGAGGAGATTACAGCTGCAAGCCTTGCAACAGGTCATTTAAGACAGAAGATGGCTTAAACTCTCATAATAAGGCTAAGCACAGTGCTAAGTAA 912 0.4265 MEFWGVEVKSGESLKVDPGDDKIIHLSNACLGDVTKAKGGESVALNVKFGNQKLVLGTLSTAKFPQISYDLIFEKEFELSHSWKNGSVFFTGFKAQSQSESDNDEDSDDLDEDIPVSAANGKPEFEVKHGVKPDEAKQKKTTDPKKNEKVKEKDANGEDEDSSESDSDGDSSEDKPTANGDIESSEGDEDSDDEDDDEDEDDEESDEETPKKIEAGKKRNIDSANKTTVPVKKAKFVTPQKPDSKNVVHVATPHPSKQAGKAIADNKRQTPKSGGDYSCKPCNRSFKTEDGLNSHNKAKHSAK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02474 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 303 IPR013087 -
Viun1g02474 303 MobiDBLite consensus disorder prediction 125 158 - -
Viun1g02474 303 ProSitePatterns Zinc finger C2H2 type domain signature. 279 300 IPR013087 -
Viun1g02474 303 MobiDBLite consensus disorder prediction 183 208 - -
Viun1g02474 303 FunFam Histone deacetylase HDT1 1 99 - -
Viun1g02474 303 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Viun1g02474 303 MobiDBLite consensus disorder prediction 96 303 - -
Viun1g02474 303 Gene3D Nucleoplasmin core domain 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02474 Viun-Chr1 35069807 35079485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02474 1 302 C2H2 Transcription Factor Family AT5G03740 40.127 7.14e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02474 NPL 7.1e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02474 - - ccaj:109796568 410.223