Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02459 ATGGATTGGCATTACACCACAAAACCATTTCTTCCTCACCCAGATACCTTAGGCTTCTTCTACAACTACAACAACAACAACCGTTATCCAGGAGTGGAAATGAAAGAAGCGACAATGTTGGAGACAGGAGAAGGTTCAATTCCGGCAATGTACAACGGAGGCAAAGAGAAGAAGAAGAGGTTAACAAGCAACCAGTTGGAGTTATTGGAGAGGAGCTTCCAGGAAGAAATAAAGTTAGACCCTGAAAGGAAGATGAAGCTTTCGAGGGAGCTAGGTCTTCAGCCTCGCCAAATCGCTGTTTGGTTCCAAAATAGACGTACGAGGTGGAAAACGAAGCAGCTTGAGCACTTATATGATGTTCTCAAGCACCAATATGATGTCATCTCCAGCGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTGAGTAAAGAGCAAGGTTTTGGGACGTATTCCAGATATCAAGAAATATCTGGAGTAGAAACGGTAGAAAGCACTTCAGAGGGTCTAAGGGGTTCGAACAAGGGACAGGGAAAGAATAAGATTGAGCAGGTTGCAGATGAGGGGTTTTGTTGTTTGAGTGTGGAGGATTATAACACTGTTTCAGTGCCTTTCTGCCAGTGGCCTGTTGCACCTTATTAG 654 0.4404 MDWHYTTKPFLPHPDTLGFFYNYNNNNRYPGVEMKEATMLETGEGSIPAMYNGGKEKKKRLTSNQLELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVISSEKQKLQEEVMKLKAMLSKEQGFGTYSRYQEISGVETVESTSEGLRGSNKGQGKNKIEQVADEGFCCLSVEDYNTVSVPFCQWPVAPY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02459 217 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Viun1g02459 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 164 IPR045224 GO:0003700
Viun1g02459 217 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Viun1g02459 217 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Viun1g02459 217 Pfam Homeobox associated leucine zipper 112 146 IPR003106 GO:0006355|GO:0043565
Viun1g02459 217 Coils Coil 118 145 - -
Viun1g02459 217 FunFam Putative homeobox-leucine zipper protein ATHB-51 54 117 - -
Viun1g02459 217 SUPERFAMILY Homeodomain-like 45 114 IPR009057 -
Viun1g02459 217 Gene3D - 52 119 - -
Viun1g02459 217 SMART HOX_1 54 116 IPR001356 GO:0003677
Viun1g02459 217 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Viun1g02459 217 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Viun1g02459 217 CDD homeodomain 55 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02459 Viun-Chr1 34955057 34956624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02459 5 146 Homeobox Transcription Factor Family AT2G36610 48.193 3.02e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun1g02459 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02459 - - vra:106757543 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02459 1 34955057 34956624 Viun1g02459 1 34955057 34956624 ECH
Viun7g00850 7 7617574 7619509 Viun1g02459 1 34955057 34956624 PCT