Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02444 ATGGGATTTGAACAGGACACAGTTCTGGTACCTCCGTGGCTGGAACAACTTCTTCACACACCTTTCTTCAACGTGTGTCGAATTCACGCAGACGCAGCTAGGAGTGAATGTAACATGTTTTGTCTAGATTGCAATGGCGAAGCCTTCTGTTTCTATTGCCGTTCTTCTCGACACAAAGATCATCGAGTCATTCAGATAAGAAGATCTTCGTATCATGATGTAGTGAGGGTGGCCGAAATTCAGAGGGTGTTGGACATAAGTGGAGTACAGACATATGTGATAAACAGTGCTCGAGTTTTGTTCTTGAATGTGAGGCCACAACCAAAATCTGGGAAAGGAGTTGCTCACATTTGTGAGATTTGTGGAAGGAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGATGTAAGCTTGAAGGAATAAAGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTAGGAACGAAGAATTAACAATGGAGACTACCACCACCACCACTACTTCAACTTCAAGAGGATCGGTCTCATCAAATCAGCAAGAAGAAGGATTGCGTGAAGGTTCAACACAAGACATGTATCAAGCCACACCTCCTTCAAACGCAAGGAGAAGAAAAGGAATTCCTCATAGGGCACCCTTTACCTCCTAG 648 0.4429 MGFEQDTVLVPPWLEQLLHTPFFNVCRIHADAARSECNMFCLDCNGEAFCFYCRSSRHKDHRVIQIRRSSYHDVVRVAEIQRVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFALDGRNEELTMETTTTTTTSTSRGSVSSNQQEEGLREGSTQDMYQATPPSNARRRKGIPHRAPFTS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02444 215 SUPERFAMILY B-box zinc-binding domain 23 68 - -
Viun1g02444 215 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 213 - -
Viun1g02444 215 MobiDBLite consensus disorder prediction 157 197 - -
Viun1g02444 215 MobiDBLite consensus disorder prediction 154 215 - -
Viun1g02444 215 Pfam PLATZ transcription factor 67 138 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02444 Viun-Chr1 34857138 34858658 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Viun1g02444 PLATZ 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02444 - - gmx:100803076 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02444 1 34857138 34858658 Viun1g02444 1 34857138 34858658 ECH
Viun1g02444 1 34857138 34858658 Viun7g00828 7 7362188 7364152 PCT