Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02442 ATGAACTCCTATGTCACCCCTCTTGTTCTCTCCACTGCTGGCATAGTTTGTTCTACTGTAGCAATAGCAGTGTACCACTGCATAATCCTCTTGAGGCATTTCGTTAGAACTCACACTACACAACGCAGGGACAGCACAACTTCTGTAAAGAGTGAAGGGATCCAACAAGAAATCCTTAACAAAATCTCAGTTTTCTCAATCTCTACAACACAAACAAGTAGTACTGGTGCCATTGCCATTCATTTGGGCCAAAATATTGAATGCTCCATTTGCCTAGGACAGTGGGAAGATGACGATGTGGTGCGGTTGTTGCCTCTTTGTAATCATGTTTTTCATAAATCCTGCGTTGATGCATGGTTCATGGACCATGCAAATTGCCCAGTTTGTCGATCACCAATCACTTCTGATTGTGAGTTAGCCTTGCCAATGGCTTCACAAAATGGTGATGCCTAA 453 0.4305 MNSYVTPLVLSTAGIVCSTVAIAVYHCIILLRHFVRTHTTQRRDSTTSVKSEGIQQEILNKISVFSISTTQTSSTGAIAIHLGQNIECSICLGQWEDDDVVRLLPLCNHVFHKSCVDAWFMDHANCPVCRSPITSDCELALPMASQNGDA 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02442 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 136 IPR013083 -
Viun1g02442 150 Pfam Ring finger domain 87 130 IPR001841 -
Viun1g02442 150 SUPERFAMILY RING/U-box 80 136 - -
Viun1g02442 150 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 134 IPR044675 -
Viun1g02442 150 SMART ring_2 88 129 IPR001841 -
Viun1g02442 150 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02442 Viun-Chr1 34839322 34839774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02442 8 131 Rapid Response to Elicitors AT3G05200 32.258 4.99e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02442 - - vra:106756930 256.529