Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02439 ATGATGGTATTCAACAGAAACCTCTTCTGGCTTTCTGCCTCTGTCATTTTTCTCTTTTCTATCTCTTTTGTTCTTCATTCCACTTCACCTTCCCCCAGAGATAACATATCCATTAGTCCTCAACATACTTTCAGTTTCCCACTTGGTATATTTAGCAAGATTATAAAGCTTAGTGGCGTTCAAGACTTGGTATCTCTGATAACAAGTATAACTAGGAGGAGACATCATCATCATCATCACCACCACCATCATCATAAGGAAAAATGTGAAGGGGCCAAGTGGGATTCCAGGCTTATTCAAGACTATAACGTGAGTCTTGTTTTCACGGTTGATTTGAAGGGTTGTGCTAACTTCAGCAGCGTTCAAAAAGCTGTTGATGCTGTTCCTGAATCTTGCTCTGATACCACCCTTATCATAATCGATTCTGGTACATACAGGGAGAAGGTAACAGTGCAAGCCAACAAAACAAACTTAATAATTCAAGGTCAAGGGTATCTGAATACAATCATAGAATGGAACGACACCGCCAATTCCACCGGCGGTACTTCCTACAGCTACTCCTTTGCCATTTTTTCTCCTAAGTTCACTGCTTACAACATCAGCTTTAAAAACACGGCTCCTCCACCGTTACCAGGAGGTGGGGCACAAGCAGTGGCATTGAGAGTTACCGGTGATCAAGCAGCTTTCTATGGATGTGGATTTTATGGTGCGCAGGATACACTGAATGATGATGGTGGAAGACATTATTTTAAAGAATGCTTAATCCAAGGATCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTAGCATAAACTGTGTAGCAAAAGCAGAGAAGGAAGAGATTAGCGGGTCGATCACTGCTCAAGGGAGACAATCGATGGATGAAGAAAGTGGTTTTTCGTTTGTGAATTGTATCATCGTTGGGAGTGGAAGAGTGTGGCTTGGAAGAGCTTGGGGACCCTTTGCCACTGTCATCTTCTCAACGACATACATGTCTGATGTGGTAGCACCAGAAGGATGGAATGATTGGAGAGATCCCTCGAGAGACCGGAGCGTGTTCTTTGGGGAGTACAGTTGCCATGGAGCTGGAGCAAATTATGCCTCCAGAGTCTCTTATGCTAAGCAACTCAAGGATTACGAAGCAAACTCCTACATGGATATTTCCTACATTGACGGAAATGATTGGCTTCTTAATTATCGTCGTAGCTATGTTAATCCTTCATATATATCTAATGCCAAACTATAA 1260 0.4206 MMVFNRNLFWLSASVIFLFSISFVLHSTSPSPRDNISISPQHTFSFPLGIFSKIIKLSGVQDLVSLITSITRRRHHHHHHHHHHHKEKCEGAKWDSRLIQDYNVSLVFTVDLKGCANFSSVQKAVDAVPESCSDTTLIIIDSGTYREKVTVQANKTNLIIQGQGYLNTIIEWNDTANSTGGTSYSYSFAIFSPKFTAYNISFKNTAPPPLPGAXGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDGGRHYFKECLIQGSIDFIFGNGRSLYEDCSINCVAKAEKEEISGSITAQGRQSMDEESGFSFVNCIIVGSGRVWLGRAWGPFATVIFSTTYMSDVVAPEGWNDWRDPSRDRSVFFGEYSCHGAGANYASRVSYAKQLKDYEANSYMDISYIDGNDWLLNYRRSYVNPSYISNAKL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02439 420 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 98 402 - -
Viun1g02439 420 Pfam Pectinesterase 110 399 IPR000070 GO:0030599|GO:0042545
Viun1g02439 420 ProSitePatterns Pectinesterase signature 2. 256 265 IPR033131 -
Viun1g02439 420 FunFam Pectinesterase 102 407 - -
Viun1g02439 420 Gene3D - 102 410 IPR012334 -
Viun1g02439 420 SUPERFAMILY Pectin lyase-like 105 403 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02439 Viun-Chr1 34791356 34801582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02439 101 402 Carbohydrate Esterase AT1G05310 52.787 1.97e-115 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02439 - - vun:114181275 821.617