Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02419 ATGGCTTTCCCCTGGGGAGCCCTCCTAACCACAACATTGTTGTTTCTTGTTGCATTCTCACTTCCTAATGCCCATGCTGCTGAAAACGACACCAACAAATATAACAAGAAAGGTGAACTCAAAAAGCAGCGACCAGCTTTTGCGCCCACTGGATGGAAGAAAGCCAAAGCTACTTTCTACGATGGAGACTCTAAATCATTCGGTGGAGCTTGTGGGTACGAAGATGTGGTTAAGGAAGGCTATGGCGAAGACACTGCAGCAGTGAGTATAGCTATGTTTAAGGAAGGTCAGACATGTGGCGCATGTTACGAGGTAAAATGCGCAGATACTGGAGGGGCATGTAAGAAAGGGAAATCCTCTATATCGGTGACGGCAACGAACCTTTGCCCTGATGGAGGATGGTGCAGCCCACCAAAGGAACACTTTGATTTGGCCAAAACTGCATTTCTGAAAATTGCAGAGGAGAAGGCTGGCGTAATCCCAGTTAATTATCGCAGGATACCGTGCAAGAAGAAGGGAGGGATTCGATTCACAATCACTGGGAATCCTCATTTTAATCTCATATCAGTGTCCAACGTTGGAGGAGCTGGGGACGTTATAGAAGTGGAGGTGAGGGGTGACAAGAAAACCAAGAATTGGACAACTATGAAGCGAAATTGGGGACAAAAATGGCAGACTGATGTCATGTTAGTGGGAGAGACATTGTCTTTCAGGGTCAGAACTAGTGATCGCAGGCACTGTATCGCTCACAAGGTTGTTCCCAATACTTGGCAATTTGGTCAAACGTTTGAAGGCAAGAACTTTTAG 807 0.4622 MAFPWGALLTTTLLFLVAFSLPNAHAAENDTNKYNKKGELKKQRPAFAPTGWKKAKATFYDGDSKSFGGACGYEDVVKEGYGEDTAAVSIAMFKEGQTCGACYEVKCADTGGACKKGKSSISVTATNLCPDGGWCSPPKEHFDLAKTAFLKIAEEKAGVIPVNYRRIPCKKKGGIRFTITGNPHFNLISVSNVGGAGDVIEVEVRGDKKTKNWTTMKRNWGQKWQTDVMLVGETLSFRVRTSDRRHCIAHKVVPNTWQFGQTFEGKNF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02419 268 Pfam Expansin C-terminal domain 175 254 IPR007117 -
Viun1g02419 268 SUPERFAMILY PHL pollen allergen 171 265 IPR036749 -
Viun1g02419 268 Gene3D - 36 170 IPR036908 -
Viun1g02419 268 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Viun1g02419 268 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Viun1g02419 268 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Viun1g02419 268 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Viun1g02419 268 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Viun1g02419 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 265 IPR007117 -
Viun1g02419 268 Gene3D - 172 268 IPR036749 -
Viun1g02419 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 174 IPR007112 -
Viun1g02419 268 Pfam Lytic transglycolase 85 164 IPR009009 -
Viun1g02419 268 SMART dpbb_1 85 164 IPR007112 -
Viun1g02419 268 SUPERFAMILY Barwin-like endoglucanases 51 192 IPR036908 -
Viun1g02419 268 CDD DPBB_EXPA_N 51 169 - -
Viun1g02419 268 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Viun1g02419 268 PRINTS Expansin signature 251 267 IPR002963 GO:0009664
Viun1g02419 268 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Viun1g02419 268 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Viun1g02419 268 PRINTS Expansin signature 173 185 IPR002963 GO:0009664
Viun1g02419 268 PRINTS Expansin signature 222 243 IPR002963 GO:0009664
Viun1g02419 268 PRINTS Expansin signature 185 206 IPR002963 GO:0009664
Viun1g02419 268 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Viun1g02419 268 PANTHER EXPANSIN-A15 23 268 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02419 Viun-Chr1 34639117 34640293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02419 52 268 Expansin Gene Family AT2G39700 53.304 3.36e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02419 - - var:108322385 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02419 1 34639117 34640293 Viun1g02419 1 34639117 34640293 ECH