Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02413 ATGCAAATCATCAAGGGCAAGCGCACCAAGCGTCAAAGGCTTCCTTCCCCACTTAGGTTAACCATGTCAACATGTTCCACCGACAACTCCGCAGGTTTTGACCCTCCGACAACCTCGAATGAATTAAGGAGCGAAGAGGATGAAGACCTGGCCAATTGTTTGATTCTCTTGGCTCGAGGCCATAACACTCCAAAACCCTCACACACCAAGGAATCGGGGCTATATGTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCGTTTCAAGCCCTCGGGGGCCACCGAGCCAGCCACAAGAGATTTTCCAAGCCTGGTGCAGAAGAAAAGCAAGGACTAGTTCATAGCAGTAATAGTAATCACGATGATTTTTGTGTACCCACAAGCACCACCCTCACCTTACAATTATCAACGGTTTTGTATAATAGCAGCAACAGCACTATTACTGCCAAATCTAGGGTTCATGAGTGTTCCATATGTGGGGCAGAGTTCTCATCTGGGCAAGCCTTGGGGGGGCACATGAGAAGGCACAGAAATTTTCTGAGTTCACCTTCGGGTGGGGCAATTGCATATGGTGGTGATGGAATCGTTGAAATCCCAGAAAGCAAGAAACAGAAAGATGGTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCATCACAGAGAATCCAACCTGTTTCCTTTTCAGTCCAAGGAAAAAGTCATTGTCTTCTCTGCAACTTCTTTGGTGGATTGCCATTACTGA 753 0.4688 MQIIKGKRTKRQRLPSPLRLTMSTCSTDNSAGFDPPTTSNELRSEEDEDLANCLILLARGHNTPKPSHTKESGLYVYECKTCNRCFPSFQALGGHRASHKRFSKPGAEEKQGLVHSSNSNHDDFCVPTSTTLTLQLSTVLYNSSNSTITAKSRVHECSICGAEFSSGQALGGHMRRHRNFLSSPSGGAIAYGGDGIVEIPESKKQKDGLNLDLNLPAPEDDHHRESNLFPFQSKEKVIVFSATSLVDCHY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02413 250 Pfam C2H2-type zinc finger 76 100 - -
Viun1g02413 250 Pfam C2H2-type zinc finger 154 178 - -
Viun1g02413 250 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Viun1g02413 250 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Viun1g02413 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 177 IPR013087 -
Viun1g02413 250 PANTHER ZINC FINGER PROTEIN ZAT5 36 231 - -
Viun1g02413 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Viun1g02413 250 SUPERFAMILY beta-beta-alpha zinc fingers 76 177 IPR036236 -
Viun1g02413 250 MobiDBLite consensus disorder prediction 20 45 - -
Viun1g02413 250 MobiDBLite consensus disorder prediction 20 39 - -
Viun1g02413 250 Gene3D Classic Zinc Finger 74 177 - -
Viun1g02413 250 SMART c2h2final6 77 99 IPR013087 -
Viun1g02413 250 SMART c2h2final6 155 177 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02413 Viun-Chr1 34583968 34585038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02413 2 250 C2H2 Transcription Factor Family AT2G28200 42.517 1.05e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02413 zf-C2H2_6 1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02413 - - var:108322426 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02413 1 34583968 34585038 Viun1g02413 1 34583968 34585038 ECH
Viun7g01003 7 10339603 10340781 Viun1g02413 1 34583968 34585038 ECH
Viun5g03323 5 43665271 43666504 Viun1g02413 1 34583968 34585038 ECH
Viun1g02413 1 34583968 34585038 Viun5g03323 5 43665271 43666504 ECH
Viun1g02413 1 34583968 34585038 Viun7g01003 7 10339603 10340781 PCT