Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02409 ATGCTCCAGACAACCTGCATTTTGCTACTCTCACTTCTAAGTTTTTTTTCACCACTTGGAACGGCAATGCTTAACCTAACTCTTCCAGGAGCACATCCAGACCCCGAAGCTGTTGCCCATGAAGTTCATAGGAAGGTTAATGCTTCGATTGCAAGAAGGGAGATGTTATCAGTGTCGGAGAGAGATGAGTCTTCGTGTCTAACGGGAAACCCCATTGATGATTGTTGGAAATGTGACCCAGACTGGCCCAACAATCGGCAGAGGCTAGCTGACTGCGCCATTGGGTTTGGTCAGTATGCAAAGGGAGGGAAAGGTGGTGAGTTTTACGTGGTGACTGATTCCTCTGACGGGGATCCTGTGAACCCAAAACCTGGGACGCTGAGATACGCTGTGATACAGAACGAGCCACTCTGGATCGTCTTCCCCAGTAACATGATGATTAAGCTGTCCCAGGAGCTGATTTTTAACAGCTACAAGACCATTGATGGACGCGGTGCTGATGTGCACATCGTCGGAGGAGGCTGCATTACTCTGCAGTATATAAGCAATGTCATCATACACAACATTCACATCCATCATTGTCATCCCTCAGGGAACACGAACGTTCGGTCAAGCCCGGAGCACTACGGATTCCGGACATTGTCGGACGGGGATGGAATATCTATATTCGGGGCGAAGGATATATGGATCGACCACTGCACGCTGTCGCGGTGCAAGGACGGGCTGATAGACGCGGTGATGGGTTCGACGGGGATAACCATCTCGAACAACTACCTCTCCCACCACAACGAGGTGATGCTCCTGGGCCACAGCGACGACTACCTCCCAGACTCCGGCATGCAGGTAACCATCGCCTTCAACCACTTCGGGGAGAAGCTGGTCCAGAGAATGCCCCGCTGCCGGAGGGGCTACATCCACGTCGTCAACAACGACTTCACGGAGTGGGAGATGTACGCCATCGGTGGCAGCGGCGAACCCACCATTAACAGCCAGGGGAACCGCTACATGGCACCCCAAAACCCCTTCGCCAAGGAGGTTACGAAACGAGTGGACACCCAACAGTCCAAGTGGAAGGGCTGGAACTGGAGGTCCGAGGGTGACATTTTACTCAACGGTGCCTTCTTCGTTGCGTCCGGCGAAGGACTCGAGGTCAAGTACGAGAAAGCCTACAGCGTCGAACCTAAGTCCGCCGATCGTATCTCTCTTCTCACCATGTCCTCCGGTGTTCTTGGAAATGCCAGGGACAACAACCTCGGAATGTGGAGCAGAGGACCTGGTGATGAATCTACGGAGTCCGGCATGGAATACACCGACGAAATGTCCACCACTGCAACAATCATTCCACCGTCTCTTTTCCTTCTCTTGTTGTCTTCCACCACAATCTTCACGGTTATTCTATAG 1401 0.5253 MLQTTCILLLSLLSFFSPLGTAMLNLTLPGAHPDPEAVAHEVHRKVNASIARREMLSVSERDESSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDGDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTLSDGDGISIFGAKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYMAPQNPFAKEVTKRVDTQQSKWKGWNWRSEGDILLNGAFFVASGEGLEVKYEKAYSVEPKSADRISLLTMSSGVLGNARDNNLGMWSRGPGDESTESGMEYTDEMSTTATIIPPSLFLLLLSSTTIFTVIL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02409 466 SMART amb_all 144 341 IPR002022 -
Viun1g02409 466 PANTHER PECTATE LYASE 18-RELATED 30 412 IPR045032 GO:0030570
Viun1g02409 466 Pfam Pectate lyase 153 329 IPR002022 -
Viun1g02409 466 Gene3D - 69 411 IPR012334 -
Viun1g02409 466 SUPERFAMILY Pectin lyase-like 64 394 IPR011050 -
Viun1g02409 466 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Viun1g02409 466 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Viun1g02409 466 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Viun1g02409 466 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Viun1g02409 466 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Viun1g02409 466 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Viun1g02409 466 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Viun1g02409 466 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Viun1g02409 466 FunFam Pectate lyase 69 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02409 Viun-Chr1 34535203 34537893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02409 1 465 Polysaccharide Lyase AT3G53190 74.207 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02409 K01728 - gmx:100775595 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02409 1 34535203 34537893 Viun1g02409 1 34535203 34537893 ECH
Viun1g02409 1 34535203 34537893 Viun7g01000 7 10271912 10275653 PCT