Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02400 ATGGCCTCTCTTATTGAATTCGCGGACTACGATGAAAACCTAATTGCGGCGCCACAACTTATTGGAAACCCCGCAGACTATGGAATCACCGACGATGAAGAAACCGACGACGAAGGCGAAGAAGATGAAGACGACGAGGATTACGTTCCTGGTGTGGCCACCCTTAGGGTTTCGCATGACACTCCTCCAACTGTTTCATCCGATAACGTAATCGTTATCCCCGACGAATCACAGGACTGCGTTGAAGAGGAAAGGAATAAACGCCGCAGGTTCGAAGGAGGCGAGGCTTCTTGTTCCTTCGCGACTGGGAGCAGCAATGGTAGCCAAGGAAACGACCATACCGACATTGACGGTCTCTTTTGCCCTATTTGCATGGATGTTTGGACCAATAACGGCGAACATCATATCTGTTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAGATGGCTTCAACAGCGAAAAAATTCCAGCAAGTGTCCCCAATGTAATAGGAAATGTACGTTGAAGGATGTGAGGAAACTGTTTGCTTCCCGAGTAGTTGCGGTCGAGGAAGAATCTCAGAAGAGAATTCAGTCGCTTGAGGCCAAATGTGCTGCCCTTGAAAGTAAGGTCAGTGATTGGCGTAAGAAAGAAGAGGGATGGAAATTTCGAGAAATCACCTTGCATTCTCAAGTTCAGACTCTTACGCAGAAAGAGATTCATCTCGATGGTGCACGCGTTTTTGATATGGACATTTCTAATCAAATTGTATTAATCGCACAAAAGCCAAAGGAAGTTGGTGGAATGCACTTGCTAACTAAAATGAGCTTGTTGTCTCCATTTGAGATGCAAGATATCTTACTTCCTTCTGCAACAAGTGGTGTTAAAGACCTTCATATTTCCCCTTCTAATAGTAGTATGGCTCTCTTCTCTTCATTGGGGAAGAAACTATCAGTGCTCAGCTTGGACAGTGGCAATCTTGTTATCAATTATGATCTACAGGATCCTGCATGGTCTTGTTCGTGGGATCTGAACAATTCGCATAACATATATGCTGGATTACAGAATGGTTCTGTCTTAGTGTTTGACATGCGTCAAACTGTGGGCCCCGTGAAATCTTTAGTTGGTTTGACTAATAACCCTGTGCATACTGTTACTTCTCTTGCACAAACTTCAAGTCTTTCTTCGAGTGTTAAAACCATACTATCGGCATCTGCGTTTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAACGGCCGCTCGTGGTTCCTGAAACTGATAATCAAGGAGTCTGCATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGCTTCTTACAGACCGAAATTCAACATGTCGATGGATGTGCCTCTATCTCAACCGTTGGCCACTCCTCTTATTGCTGGACAAGGAGTACAGGGCACTCATGTCTTGTTCAACAGAATGGGTAGTCATCATTTCCAAAAGGTGGGTTCCTCCCATGCAAATGTAAGTAAAATTCGACTACCAAAATGTGTAATTATGGACGTAGAGAGTCAGAGCAGATTGTTAGCATCTTGGGATGAAGTTACATGTGATTTGGTCTTGCACGAGTTGCCATCTTTTAGACTTCTTCAGCAATTCAAAATGCCAGCTCAGGCCCGTGATCTTAGATACTCACATAGCCACGGCGTACTTGGTTGTCTAAGTGAGAACACGTTGCAGCTCTTCTATTCCAAGCACTCGTCGGTAAGGTAA 1734 0.4446 MASLIEFADYDENLIAAPQLIGNPADYGITDDEETDDEGEEDEDDEDYVPGVATLRVSHDTPPTVSSDNVIVIPDESQDCVEEERNKRRRFEGGEASCSFATGSSNGSQGNDHTDIDGLFCPICMDVWTNNGEHHICCLPCGHIYGMSCIKRWLQQRKNSSKCPQCNRKCTLKDVRKLFASRVVAVEEESQKRIQSLEAKCAALESKVSDWRKKEEGWKFREITLHSQVQTLTQKEIHLDGARVFDMDISNQIVLIAQKPKEVGGMHLLTKMSLLSPFEMQDILLPSATSGVKDLHISPSNSSMALFSSLGKKLSVLSLDSGNLVINYDLQDPAWSCSWDLNNSHNIYAGLQNGSVLVFDMRQTVGPVKSLVGLTNNPVHTVTSLAQTSSLSSSVKTILSASAFGLCQWNIDSEERPLVVPETDNQGVCISLAYCPSSDDIVASYRPKFNMSMDVPLSQPLATPLIAGQGVQGTHVLFNRMGSHHFQKVGSSHANVSKIRLPKCVIMDVESQSRLLASWDEVTCDLVLHELPSFRLLQQFKMPAQARDLRYSHSHGVLGCLSENTLQLFYSKHSSVR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02400 577 Coils Coil 187 214 - -
Viun1g02400 577 SUPERFAMILY WD40 repeat-like 231 540 IPR036322 GO:0005515
Viun1g02400 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 188 IPR013083 -
Viun1g02400 577 Gene3D - 189 453 IPR015943 GO:0005515
Viun1g02400 577 SMART ring_2 121 166 IPR001841 -
Viun1g02400 577 MobiDBLite consensus disorder prediction 29 48 - -
Viun1g02400 577 Pfam Ring finger domain 121 167 IPR001841 -
Viun1g02400 577 CDD mRING-C3HGC3_RFWD3 117 179 - -
Viun1g02400 577 MobiDBLite consensus disorder prediction 22 48 - -
Viun1g02400 577 SUPERFAMILY RING/U-box 115 173 - -
Viun1g02400 577 PANTHER RFWD3 PROTEIN 231 570 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Viun1g02400 577 ProSiteProfiles Zinc finger RING-type profile. 121 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02400 Viun-Chr1 34463151 34469493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02400 32 179 C3H Transcription Factor Family AT3G07200 27.119 8.95e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02400 K15691 - gmx:100818898 768.459