Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02393 ATGGGTAGAGCTCCTTGCTGTGACAAGGCAAATGTAAAGAAAGGGCCATGGTCACCAGAAGAAGATGCAAAGCTAAAGGACTACATAGACCAACATGGCACCGGAGGGAATTGGATTGCGCTCCCCCAAAAAGTTGGTTTGAAAAGATGTGGCAAGAGCTGTCGATTAAGGTGGCTTAATTATCTTAGACCCAACATTAAGCACGGTCAATTTTCTGATGCAGAAGATAAAATAATCTGTAGCCTCTTCGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGCTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACGAAGCTTAAGAAGAAAATGATGGCCATGAATGCTTCTCCCCAGAAGAAGCCTCTTCAAATCACCCTTTTATCCATCCTTGAAAGCTCAACACCATCTTCATCACCATTGTCATTCAGAGACACCACCAACTCATACTACCATCCCCACGCTTCTTTCACAGGCGTTGCCTCCTTTTCCTACTCTTCTGCTTCTGCTGATTCCTTCTTTCAAGCACAAGAGAGTTTCATGGACCCAACCCAGAAGTGCCAATTCAAAGATAGCACCAACAACACCATGTTTGTGTTCGGTGGTGAAGCCACGGCCACTAGTTGCAGCTCTTCTGATGCGAGCTGCAACAACCAGATCAGCCAAATCATGGAGCCAGAATTTGGCGAGGCTAGCTTTGTGGAGCAGATAGGTGTTGCTGCTGATAATCCCCTCTACAGTGGTGGCAGTGCTAGTGTTAGTGGGTGGACAGACAAACAAAATGGATTGTGGGAACAAAATCCGTTGGATTATTATGGTCTAGAGGAAATTAAACAGCTAATTAGCACTAATAACAGTTTTAACAACTTTTTGTTTGATGATAAGAAGACACAAGAAAGGGTCACGTATTACTGA 933 0.4448 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNASPQKKPLQITLLSILESSTPSSSPLSFRDTTNSYYHPHASFTGVASFSYSSASADSFFQAQESFMDPTQKCQFKDSTNNTMFVFGGEATATSCSSSDASCNNQISQIMEPEFGEASFVEQIGVAADNPLYSGGSASVSGWTDKQNGLWEQNPLDYYGLEEIKQLISTNNSFNNFLFDDKKTQERVTYY 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02393 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Viun1g02393 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Viun1g02393 310 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Viun1g02393 310 CDD SANT 71 113 IPR001005 -
Viun1g02393 310 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Viun1g02393 310 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Viun1g02393 310 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Viun1g02393 310 FunFam Transcription factor RAX3 7 68 - -
Viun1g02393 310 CDD SANT 16 62 IPR001005 -
Viun1g02393 310 Gene3D - 69 132 - -
Viun1g02393 310 PANTHER OS09G0431300 PROTEIN 1 271 - -
Viun1g02393 310 Gene3D - 7 68 - -
Viun1g02393 310 SMART sant 13 64 IPR001005 -
Viun1g02393 310 SMART sant 67 115 IPR001005 -
Viun1g02393 310 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02393 Viun-Chr1 34401620 34403379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02393 1 119 MYB Transcription Factor Family AT5G57620 87.395 6.63e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g02393 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02393 K09422 - gmx:778084 484.952