Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02392 ATGTCAAAAGATTCTGAGGAGATAAAAACCATAGAGCAGTGGAAATGGTCAGAAATGCAAGGCCTTGAGCTTGTTCCTGATGCTGCAACTTCACCACAGCAACAACAACAAGGCCAGGTTCCAAGGGAAATGGAGACAACTCGTGAACAACCCAACAAAGATGTTGCTGCTGCTCCTGCGGCTACCATGAACGGTGGTTCCATTAGTGGGGAGAAGGCAGAGAGTGTTCCCTCTGTTGGGTTTGGAGAGCTTTTCAGATTCGCTGATGGGTTGGATTATGTTCTCATGGGAATTGGAACGGTTGGAGCAGTTGTGCACGGTTGTTCACTGCCTCTCTTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTAATGATGTCGACAAGATGACTCAGGAAGTGGTTAAGTATGCATTTTACTTCCTGGTGGTGGGGGCTGCTATATGGGCATCATCCTGGGCAGAGATTTCGTGTTGGATGTGGAGTGGGGAGCGTCAATCCACCAAGATGAGAATCAAGTATCTGGAGGCTGCGTTGAATCAGGACATTCAGTTCTTCGACACTGATGTTCGGACTTCCGATGTTGTCTTCGCCATCAACACCGATGCTGTCATGGTGCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCTACGTTTGTTTCTGGCTTTGTGGTGGGTTTCACTGCTGTGTGGCAATTGGCTCTGGTCACTCTCGCTGTCGTTCCTATGATAGCTGTGATCGGAGGCATTCACACCACCACCTTGGCCAAGCTCTCTGGCAAGAGCCAGGAAGCTCTCTCTCAAGCTGGCAACATTGTGGAACAGACTGTTGCACAAATCCGAGTGGTGCTGGCCTTCGTTGGGGAGTCCAGAGCATTACAGGCCTATTCATCAGCCTTGAGGGTTGCACAGAAGCTTGGCTACAAAACTGGGTTTGCAAAGGGAATGGGGTTGGGGGCCACCTACTTTGTTGTTTTCTGCTGTTACGCGCTTCTGCTGTGGTATGGAGGCTATCTTGTCAGGCACCATGCCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATCGGTGGATTGGGTTTGGGGCAATCTGCACCGAGCATGGCTGCATTTACAAAGGCCAGAGTAGCTGCTGCAAAGATTTTCCGAATAATTGATCACAAGCCGAGTATTGATAGAAATAGCGAATCTGGCATTGAACTAGAGACTGTTACTGGACTTGTGGAACTGAAAAATGTAGACTTTTCTTACCCATCTAGGCCAGAGGTTCGGATCCTCAATGATTTCTCCTTGAATGTGCCTGCTGGTAAAACCATAGCTCTGGTGGGTAGCAGCGGCTCTGGTAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGACCCAACTTCAGGACAAGTCCTATTAGATGGGCATGACATTAAAACTTTGAAGCTTAGATGGTTGAGGCAGCAGATAGGATTAGTGAGCCAAGAGCCAGCTTTGTTTGCAACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCTAGAGTTGCTAATGCGCATTCCTTCATCATTAAACTTCCCGAAGGCTATGAAACCCAGGTCGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAGCAGAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTGGACTCAGAGTCAGAAAAGCTGGCAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTCATTGCGCATCGCCTCTCCACAATTCGCAAAGCTGATCTTGTGCTGTTCTTCAGCAAGGAAGTGTCTGAAATTGGAACTCATGATGAGCTGTTCAAAGGTGAAAATGGAGTCTATGCTAAGCTTACGATGCAGGAGATGGCTCATGAAACTTCCATGAGTAATGCCAGAAAGAGCAGTGCAAGGCCTTCAAGTGCCAGAAACTCTGTCAGCTCGCCAATAATTGCTAGGAATTCTTCTTATGGGCGATCACCATACTCACGCAGACTATCTGACTTTTCTACATCTGATTTTAGTCTGTCCCTTGATGCATCACATGCAAATTACAGGCCAGAAAAGCTTGCCTTCAAAGATCAAGCTAGTTCCTTCTGGCGACTTGCAAAAATGAACTCTCCCGAATGGCTATATGCCTTAATTGGTTCTATAGGATCTGTTGTTTGTGGATCCCTCAGTGCATTTTTTGCTTATGTTCTTAGTGCTGTCCTCAGCGTTTATTACAATCCAAACCACAGACACATGATCCAAGAAATTGAAAAGTACTGTTACTTGTTGATTGGGCTATCATCTGCTGCTCTCCTCTTCAACACATTGCAGCACTCCTTCTGGGATATTGTTGGTGAAAATCTTACGAAACGAGTGAGGGAGAAAATGCTTACTGCAGTGCTTAAAAATGAAATGGCGTGGTTTGATCAGGAGGAAAATGAAAGTGCTCGAATTGCAGCAAGGCTATCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGGATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGTACTGCAGGGTTTGTATTGCAATGGCGCCTTGCCCTTGTTCTTGTAGCCGTATTCCCGGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGCGACCTGGAAGCTGCTCATGCCAAGGCCACTCAACTAGCAGGAGAGGCTATAGCCAATGTAAGGACAGTTGCTGCTTTTAATTCAGAAAGGAAAATTGTTGGCCTTTTCACATCCAACCTTGAAACTCCACTGCGGCGCTGTTTTTGGAAGGGACAGATTTCAGGAAGTGGATATGGAATAGCTCAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCACGGTATATCTGATTTTTCTAAAACAATCCAAGTTTTTATGGTTCTCATGGTCTCAGCTAATGGTGCTGCTGAAACTTTAACCCTGGCTCCTGACTTCATAAAGGGTGCGTGCCATGAGATCGTGTTTGCTCTTGACCGAAGAACTGAGATTGAGCCAGATGATGCAGATGCTACTCCTGTTCCTGATCACCTTCGTGGTGAAGTAGAACTCAAGCATGTTGATTTCTCTTATCCAACAAGACCAGACATGTCAGTTTTTCGCGACCTAAGCCTTCGTGCCAGGGCAGGTAAAACTCTTGCCCTTGTAGGGCCTAGTGGCTGTGGTAAGAGTTCAGTCATTGCCCTTGTACAAAGGTTCTATGATCCAACATCTGGGAGGGTCATGATTGATGGAAAGGACATAAGGAAATACAATCTGAAGTCTCTTAGAAGGCACATTGCTGTGGTGCCTCAGGAGCCGTGCCTATTTGCTACTACTATTTATGAGAACATTGCTTATGGACATGACTCAGCCACTGAAGCTGAGATCATAGAGGCTGCAACTCTTGCCAATGCTCACAAGTTCATATCTTCTCTGCCTGATGGATTCAAGACCTTTGTTGGTGAGAGGGGTCAACTATCAGGGGGACAAAAGCAAAGAATAGCAATTGCTAGAGCTTTTGTGAGGACTGAGCTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAGGAGGCCTTGGACCGTGCCTGTGCTGGAAAAACCACCATCATTGTTGCACACAGGCTATCAACTATTAGGAATGCCAATCTGATTGCAGTGATGGATGATGGTAAGGTAGCAGAACAAGTCCATTCACAGTTGTTAAAGAATCACCCTGATGGAATCTATGCACGCATGATTCAGCTGCAAAGGTTCACAAATAACCAAGTCATTGGAATGGCCACAGGATCAAGTTCTTCAGCAAGATCAAAAGATGATGAAAGAGAAGGCTAG 3999 0.4609 MSKDSEEIKTIEQWKWSEMQGLELVPDAATSPQQQQQGQVPREMETTREQPNKDVAAAPAATMNGGSISGEKAESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPLFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLEAALNQDIQFFDTDVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIVEQTVAQIRVVLAFVGESRALQAYSSALRVAQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDRNSESGIELETVTGLVELKNVDFSYPSRPEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVXEALDRFMIGRTTLVIAHRLSTIRKADLVLFFSKEVSEIGTHDELFXKGENGVYAKLIXMQEMAHETSMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHANYRPEKLAFKDQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRHMIQEIEKYCYLLIGLSSAALLFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSERKIVGLFTSNLETPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIQVFMVLMVSANGAAETLTLAPDFIKGACHEIVFDXLDRRTEIEPDDADATPVPDHLRGEVELKHVDFSYPTRPDMSVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYDPTSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLPDGFKTFVGERGXQLSGGQKQRIAIARAFVRKXELMLLDEATSALDAESERSVQEALDRACAGKTTIIVAHRLSTIRNANLIAVMDDGKVAEQGXHSQLLKNHPDGIYARMIQLQRFTNNQVIGMATGSSSSARSKDDEREG 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02392 1339 FunFam ABC transporter B family member 1 83 418 - -
Viun1g02392 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1064 1312 IPR027417 -
Viun1g02392 1339 SUPERFAMILY ABC transporter transmembrane region 738 1224 IPR036640 GO:0005524|GO:0016020
Viun1g02392 1339 Gene3D ABC transporter type 1, transmembrane domain 731 1039 IPR036640 GO:0005524|GO:0016020
Viun1g02392 1339 FunFam ABC transporter B family member 1 730 1039 - -
Viun1g02392 1339 CDD ABC_6TM_Pgp_ABCB1_D1_like 96 393 - -
Viun1g02392 1339 Gene3D - 1071 1318 IPR027417 -
Viun1g02392 1339 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1073 1309 IPR003439 GO:0005524
Viun1g02392 1339 Pfam ABC transporter transmembrane region 752 1021 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02392 1339 Pfam ABC transporter transmembrane region 97 370 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02392 1339 Pfam ABC transporter 1092 1240 IPR003439 GO:0005524
Viun1g02392 1339 FunFam ABC transporter B family member 1 410 659 - -
Viun1g02392 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 658 IPR027417 -
Viun1g02392 1339 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 98 385 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02392 1339 Pfam ABC transporter 438 587 IPR003439 GO:0005524
Viun1g02392 1339 MobiDBLite consensus disorder prediction 27 45 - -
Viun1g02392 1339 ProSitePatterns ABC transporters family signature. 1212 1226 IPR017871 GO:0005524|GO:0016887
Viun1g02392 1339 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 420 655 IPR003439 GO:0005524
Viun1g02392 1339 CDD ABC_MTABC3_MDL1_MDL2 420 658 - -
Viun1g02392 1339 Gene3D ABC transporter type 1, transmembrane domain 1043 1070 IPR036640 GO:0005524|GO:0016020
Viun1g02392 1339 PANTHER ABC TRANSPORTER B FAMILY 69 763 IPR039421 -
Viun1g02392 1339 Gene3D ABC transporter type 1, transmembrane domain 83 673 IPR036640 GO:0005524|GO:0016020
Viun1g02392 1339 CDD ABC_6TM_Pgp_ABCB1_D2_like 740 1055 - -
Viun1g02392 1339 SMART AAA_5 1100 1293 IPR003593 GO:0016887
Viun1g02392 1339 SMART AAA_5 447 633 IPR003593 GO:0016887
Viun1g02392 1339 FunFam ABC transporter B family member 1 1063 1313 - -
Viun1g02392 1339 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 751 1038 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g02392 1339 ProSitePatterns ABC transporters family signature. 559 573 IPR017871 GO:0005524|GO:0016887
Viun1g02392 1339 MobiDBLite consensus disorder prediction 20 69 - -
Viun1g02392 1339 CDD ABC_MTABC3_MDL1_MDL2 1073 1312 - -
Viun1g02392 1339 Gene3D - 410 659 IPR027417 -
Viun1g02392 1339 SUPERFAMILY ABC transporter transmembrane region 84 404 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02392 Viun-Chr1 34373782 34379813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02392 71 1334 Calmodulin-binding Proteins AT2G36910 87.845 0.0 2271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02392 K05658 - gmx:100814667 2342.38