Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02380 ATGAAGTGTTTTACATTCTCCTATGGAGAGAAGAAAGATGAGCCTAAAGGCTTGCGATCAACATCGGGCCGGTCGGAGAATTCCACGTGTGCTGATATTAGAAGATCTGGTTCTGAGTTAAATTCTCAGGAAGTTTCAGACAATGGCAGCACAGAATCTCTCAGGAGGAATGCAATACCCAGTTTGTCCCAGAGGTCCAGCAACCTCAGAGTGTTTACTGTTTCTGAACTGAAATCAGCCACAAAGAATTTCAGTCGCTCTGTTATGATTGGAGAAGGCGGGTTTGGGTGTGTCTACCTGGGATTGATCAAAAGTGTGGAGGTCCCCTCTGGAAGAATTGAAGTTGCAGTTAAACAGCTTAGTAAAAGAGGAATGCAGGGGCACAGGGAATGGGTGACAGAAGTGAATGTTCTTGGTGTTGTTGAGCATCCGAATCTTGTGAAACTAGTGGGTTATTGTGCAGAAGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATACATGCCTAACAGAAGTGTGGAACACCATTTATCCCACCGATCAGAGGCTCCTCTCTCATGGAGTAGGAGATTGAAAATAGCACGAGATGCAGCTCGTGGATTAACATACCTGCATGAAGAAATGGGTTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTTTGGATGAACAATGGAATGCAAAGCTCTCAGACTTTGGGTTGGCTAGGTTGGGACCATCAGATGGACTGACTCATGTCTCAACCGCGGTTGTGGGAACAATGGGATATGCATCTCCAGAATATGTTCAAACTGGACGTCTAACATCAAAGAATGATGTGTGGAGCTACGGTGTCTTCCTTTATGAACTCATCACCGGTAGGCACCCTATAGATCGAAATCGCCCCAGAGGTGAGCAGAAGCTCTTGGAATGGATAAGGCCATACCTATCAGATGGGAGGAAATTTCAACTGATATTAGACCCAAGACTTGATAAGAAACAAATCTTCAAATCGGCCCAGAGACTTTCTATGATAGCAAACCGATGCTTGGTAAAAAATCCAAAGAATCGCCCAAAGATGAGTGAGGTATTGGAAATGGTGAATGGGATGGTAGAATCATCCTCATCCTGTTCCAGTCCACAATTGCCCTTGAGGAGTGTGTCAAGAGTGGAAAGTTCCCAGGATACTGAAACAAATAACAAGAAACGGACCATGGATCAGAAGCCTGGAGAAAGTAATTGGTTTGCTAGGATGTGGAGACCAAAGCTTGTAAGAACATGTTGA 1278 0.4382 MKCFTFSYGEKKDEPKGLRSTSGRSENSTCADIRRSGSELNSQEVSDNGSTESLRRNAIPSLSQRSSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYLGLIKSVEVPSGRIEVAVKQLSKRGMQGHREWVTEVNVLGVVEHPNLVKLVGYCAEDDERGIQRLLIYEYMPNRSVEHHLSHRSEAPLSWSRRLKIARDAARGLTYLHEEMGFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYASPEYVQTGRLTSKNDVWSYGVFLYELITGRHPIDRNRPRGEQKLLEWIRPYLSDGRKFQLILDPRLDKKQIFKSAQRLSMIANRCLVKNPKNRPKMSEVLEMVNGMVESSSSCSSPQLPLRSVSRVESSQDTETNNKKRTMDQKPGESNWFARMWRPKLVRTC 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02380 425 MobiDBLite consensus disorder prediction 1 20 - -
Viun1g02380 425 FunFam Serine/threonine-protein kinase BIK1 51 169 - -
Viun1g02380 425 PANTHER OS01G0588500 PROTEIN-RELATED 46 366 - -
Viun1g02380 425 ProSitePatterns Protein kinases ATP-binding region signature. 90 118 IPR017441 GO:0005524
Viun1g02380 425 MobiDBLite consensus disorder prediction 372 392 - -
Viun1g02380 425 FunFam Serine/threonine-protein kinase PCRK2 170 379 - -
Viun1g02380 425 MobiDBLite consensus disorder prediction 1 59 - -
Viun1g02380 425 Gene3D Transferase(Phosphotransferase) domain 1 170 381 - -
Viun1g02380 425 MobiDBLite consensus disorder prediction 372 410 - -
Viun1g02380 425 Pfam Protein tyrosine and serine/threonine kinase 89 363 IPR001245 GO:0004672|GO:0006468
Viun1g02380 425 SUPERFAMILY Protein kinase-like (PK-like) 61 365 IPR011009 -
Viun1g02380 425 Gene3D Phosphorylase Kinase; domain 1 64 169 - -
Viun1g02380 425 ProSiteProfiles Protein kinase domain profile. 84 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02380 425 MobiDBLite consensus disorder prediction 21 59 - -
Viun1g02380 425 CDD STKc_IRAK 90 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02380 Viun-Chr1 34286022 34291448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02380 1 362 Glycoside Hydrolase AT3G07070 41.918 4.42e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun1g02380 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02380 - - gmx:100813060 775.007