Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02375 ATGAGCAACCACACACTTGTTATGGATGAAGATGGAGGGGATGCCCGTTCTGGGTGCATTGAGGGATTGGCTAAAGAGTATCAAAATAATGCACAAGCAAATCCGTATATGAAAAATAGAAAAGGTGGCAAGGAAGTTGTATGTTCCAATTGCTTGGGTGGTGGAGTACTTTTATGTTGCTCTGGAAAAGGATGCCAGAAGAGGTACCATCCCTCTTGTGTCGATCCTCCTCTCAAGTACATTCCTCTGAGGTTTTGGCATTGTATCTGGTGCACTATGAAAAAAGTAGAGTTTGGTGTGCATTCTATTTCTAAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCGAATAATAAAGTGATGCAAAGGGATTACTTTGTCAAGTATCAAGGTCTCGCTCATGCTCATAACCGCTGGATTACAGAATCAACAATGCTTCTTGAGGCTCCTAAGCTCTTGACCAAGTTTAAGAGTAAACCGCAGGTTACCAGGTGGAAAAGAGATTGGAGTATACCTCACCGCTTACTCCTTAAAAGAGAAATTGTGCATTATGCCGTGCATGGTGACAATGATCCAATTTGCTGTTATGAGTGGCTTGTCAAATGGACCGGTCTTGGTTATGATAACGCCACATGGGAGTTACAAGATGCTTCATTTTTGACATCAGCAAAAGGCAGGAAACTCATACGTGATTATGAAAGTCGTCGAAAGAGAGTTGATAAACTGTCAAAAAGTCACTTTGAAGACAATGAGGAGACAAAATCTTTCATTGTCGACTTATCAGTGTTGCCATTTGGAGATTCACCAGGCCTTTATAACCAGTATTTGAGTTATGTGAACAAGCTTCGCAAGTGTTGGCACAAAGGCCAAAATGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGCATTATAAAGGTGATTTTGTTTGTATTATCTTTGAATTGTAATAGCAAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCCCTCTCTGTATGGGAAACAGAGTTCTTACATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAAACAGAGATGTACGGAGTGGCATCAGGGCATTAGAGTTTTATAGTGAAGAAAATGGTATATTATTTCAAATACTATTGTCATCTTCTGATATTGTTGTTGAGGACTTACATGAACTAAGATGCATTCCATGGGAAGCGATAATAATTGATGAATGCCAGCAATCCAGAATTTCAGGACACTTGGACAGTATCAAGATTTTAAAAACTGAAATGAAGCTCCTTCTTGTTAGTGGACAAATAAAGGAAGATCGATCTGATTATATCAAACTGCTTTCATTCCTCAAGTCTGCACATCATGGGCCAAGTATTGCTCCAATAGAAACTTCTTTCAGTGCTAGCATTTCCAATTTGAAGAGCCAATTGGAAAAATATGTTGTATTCAAATGCAAATCTGGCTCTACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCTCATTTGCAGCTTGAACAGTATTGTTCAATGCTGCTTTCAAACTTAATTTTGTTATGCTCAGGCCAGAAGTCCGACTCAGTTGGTGCACTCCATGAGCTTATTATCTCTACAAGGAAGTGCTGTGACCACCCTTATCTCCTGGAGCCGGCACTGCATAATTCTGTTGCTAAGGGTCTACCTGTTGAAGAACATTTAGATATTGGTATAAAAGCAAGCGGAAAACTGCTACTTCTTGAAAAAATCCTTTTGGAAGCAAAATGTCGTGGGTTAAGGGTGTTAATATTATTCCAGTCATCTTGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGAAAAGATTGCTATGTGCGATATGATAGAGCTTACCCTAAAACAAAGGAAGCTGCTTTAGACACATTTAATGATAGAGACAGTGGTAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCCCTAGTGTTAAGCTTTCTTTAGTGGACATTGTTGTACTGTTTGACAGTGATTTTGACCCACAGAATGACCTAAGAGGTTTACAAAAGATGTCTATCAGCACGCAGTTGAAACAGTTAACCATTTTTAGATTGTACTCATATTACACTGTTGAAGAAAAGATTTTAATGCTTGCAAAGGAGGGTATATCTCTTGACAGTAACGTGCGGTTGATTAGTCATAGTATTTCTCACACCCTTCTAAAATGGGGCACCTCTCATATGTTCAATAAGCTGGATGATTTACATGCCAGTGTAACTGCTGTTTGTACTCCAGACATTGCAGATCAAACTCTTCTGCATGATGTACTCTGTGAATTATCATCCCAATTGGTTTGTGATGCTGATGATATTGATTATCGTGAATGCTCATTCATATCAACAATACAGCAGAATCGAGGGGAATATTCGAGGAACATTTTATTGCTAGGAGAAAGAATAATGAAGGAACTGCACAGTGAGCCAGGTGCTTTTTCCTGGAGTGATCTTGAAGGAAAGTATCCTCAGTGGAAATTTTTGTCTGTTTCGTCTCGGAGGATGAGGAGTAGGGCCAAGCATTCTGATTACATAATAAATGAATCTGAATGTGAAGATCATACAATTATGGGAAAGAGGACAGCATCAAATGCTTCCAAGAAGAGAAAAGTGACCAAGGATAAAGTTGAGCCCAAGAGGAGGAAAGTGTCCAAAGACATTGTTGAAACAGAGGGGAGGGAACTGTCAAATCATGCCATTGATCTTAAGACTAGGAAGGTCGGCAATGGTATTGTTAATTCTGGGCGCAGGAAAATGTCCAAGAAAATGCTTGCTTCCAAATATCGGAAACCAAGATTGAGGAGCAAGAAGAATTCAAGTGTTGCCAATAGTAAAAGTAAATCGAATGGTACAAATGGTTTGTCTAGTGTACTTGATTCCTCAGGGCATCAAACTACGGGAGAAACTGTTACAAACATGCAACTTTCAGAGAAAAGGAAACTGCTTGAGGGACCAAATAGCATCAAATTCTTGCAAAAGTCGGATATTTCAGGTCTTTGTGAGATTCTACATTTTCCGAAAAATGTCAAGGTTGTTGCCCTGAGGATTCTTGAGCACATATTTAAACAGTACAATGTTAATTTCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTAGCAGCATCTTTGTTGAAACATGACATTGATAAGAAGGATTCACTCACTCTAGCAAAACTGTACTTGAATTTCAATTGCACTGAAGAGGAAGCCACCGATGTCTACTCAGAACTTTGGAAACATGCAAAGACATTTTCTAATTATATACAAAATGGACTGTGTGTTGAGAAATATAATATAAATGGTGCTTCAGAAACTAACGTGCCCGAGCTGAATGATTTGACCGAGGAAAAGCAGAAGGCTTTTCTGGATACTTGTGTTACAGAACTCGTGAAACCTATCACGAATGAACTTGATCTTCAAATGAAATCTCCCACTACAGTGGTTTCATGTGACCAGACTTCTACTCATGAAATTTGTTCATTTCTAAGACACCTGCAAGTATTCCTGTGGAAGCAATTGCTCTTTCCTCGGAGTTTGGCTCAGAAAATGACGTCATGGAATCTACACCCTTAA 3633 0.3928 MSNHTLVMDEDGGDARSGCIEGLAKEYQNNAQANPYMKNRKGGKEVVCSNCLGGGVLLCCSGKGCQKRYHPSCVDPPLKYIPLRFWHCIWCTMKKVEFGVHSISKGVKSILDSREVVSNNKVMQRDYFVKYQGLAHAHNRWITESTMLLEAPKLLTKFKSKPQVTRWKRDWSIPHRLLLKREIVHYAVHGDNDPICCYEWLVKWTGLGYDNATWELQDASFLTSAKGRKLIRDYESRRKRVDKLSKSHFEDNEETKSFIVDLSVLPFGDSPGLYNQYLSYVNKLRKCWHKGQNALIVDDQIDQERIIKVILFVLSLNCNSKRPFLIISTSTALSVWETEFLHLAPSANLVVYKGNRDVRSGIRALEFYSEENGILFQILLSSSDIVVEDLHELRCIPWEAIIIDECQQSRISGHLDSIKILKTEMKLLLVSGQIKEDRSDYIKLLSFLKSAHHGPSIAPIETSFSASISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQYCSMLLSNLILLCSGQKSDSVGALHELIISTRKCCDHPYLLEPALHNSVAKGLPVEEHLDIGIKASGKLLLLEKILLEAKCRGLRVLILFQSSCGSGSIGDILDDVLCQRFGKDCYVRYDRAYXPKTKEAALDTFNDRDSGKFVFLMENRACLPSVKLSLVDIVVLFDSDFDPQNDLRGLQKMSISTQLKQLTIFRLYSYYTVEEKILMLAKEGISLDSNVRLISHSISHTLLKWGTSHMFNKLDDLHASVTAVCTPDIADQTLLHDVLCELSSQLVCDADDIDYRECSFISTIQQNRGEYSRNILLLGERIMKELHSEPGAFSWSDLEGKYPQWKFLSVSSRRMRSRAKHSDYIINESECEDHTIMGKRTASNASKKRKVTKDKVEPKRRKVSKDIVETEGRELSNHAIDLKTRKVGNGIVNSGRRKMSKKMLASKYRKPRLRSKKNSSVANSKSKSNGTNGLSSVLDSSGHQTTGETVTNMQLSEKRKLLEGPNSIKFLQKSDISGLCEILHFPKNVKVVALRILEHIFKQYNVNFQEVSTVQAFEISVCWLAASLLKHDIDKKDSLTLAKLYLNFNCTEEEATDVYSELWKHAKTFSNYIQNGLCVEKYNINGASETNVPELNDLTEEKQKAFLDTCVTELVKPITNELDLQMKSPTTVVSCDQTSTHEICSFLRHLQVFLWKQLLFPRSLAQKMTSWNLHP 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02375 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 450 IPR027417 -
Viun1g02375 1211 SUPERFAMILY Chromo domain-like 67 161 IPR016197 -
Viun1g02375 1211 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 452 IPR014001 -
Viun1g02375 1211 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 101 1106 - -
Viun1g02375 1211 Pfam Chromo (CHRromatin Organisation MOdifier) domain 107 161 IPR023780 -
Viun1g02375 1211 SUPERFAMILY Chromo domain-like 167 237 IPR016197 -
Viun1g02375 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 727 IPR027417 -
Viun1g02375 1211 Gene3D - 274 489 IPR038718 -
Viun1g02375 1211 MobiDBLite consensus disorder prediction 923 988 - -
Viun1g02375 1211 Gene3D - 490 724 IPR027417 -
Viun1g02375 1211 ProSitePatterns Zinc finger PHD-type signature. 48 91 IPR019786 -
Viun1g02375 1211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 101 IPR013083 -
Viun1g02375 1211 SUPERFAMILY FYVE/PHD zinc finger 43 96 IPR011011 -
Viun1g02375 1211 ProSiteProfiles Zinc finger PHD-type profile. 45 94 IPR019787 -
Viun1g02375 1211 MobiDBLite consensus disorder prediction 936 952 - -
Viun1g02375 1211 Pfam SNF2-related domain 306 546 IPR000330 GO:0005524|GO:0140658
Viun1g02375 1211 SMART chromo_7 104 163 IPR000953 -
Viun1g02375 1211 SMART chromo_7 170 239 IPR000953 -
Viun1g02375 1211 MobiDBLite consensus disorder prediction 953 988 - -
Viun1g02375 1211 MobiDBLite consensus disorder prediction 873 906 - -
Viun1g02375 1211 SMART PHD_3 47 92 IPR001965 -
Viun1g02375 1211 MobiDBLite consensus disorder prediction 883 906 - -
Viun1g02375 1211 ProSiteProfiles Chromo and chromo shadow domain profile. 105 170 IPR000953 -
Viun1g02375 1211 CDD CD_CSD 107 160 - -
Viun1g02375 1211 Gene3D - 106 162 - -
Viun1g02375 1211 Gene3D - 164 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02375 Viun-Chr1 34225516 34244728 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun1g02375 SNF2_N 1.1e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02375 - K11643 gmx:100813574 1548.49