Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02368 ATGGCCAAGGACATAGAAACCGAGGTACGAACTGAGTTGACCCACAAGGACTACTACGACCCACCCCCAACCCCATTCTACGACGCCGCCGAGCTCCGCAAGTGGTCCTTCTACAGGGCCCTCATCGCCGAGTTCGTCGCCACCCTCCTCTTCCTCTACGTCACCATCCTCACCGTCATCGGCTACAACCACCAGATCCACGTCGGCGACTCCTGCGATGGCGTCGGCATTCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACAGCGGGCATTTCCGGGGGTCACGTAAACCCCGCCGTCACGTTCGGGTTGTTTCTGGCCAGGAAGGTGTCGCTGGTGAGAGCAATCGCCTACATGGTGGCTCAGTGCTTGGGAGCTATATGTGGCGTGGGGCTGGTAAAGGCGTTTCAGAAGAGTTACTACAACAGGTACAAGGGTGGCGTGAACTTGCTCTCTGATGGGTACAGTAAAGGCGCTGGCTTGGGCGCTGAGATTATTGGCACCTTTGTTCTTGTCTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCATGTTCCCGTTTTGGCACCACTTCCAATTGGGTTCGCGGTGTTCATGGTTCACTTGGCCACCATCCCTGTCACCGGCACCGGCATCAACCCCGCCAGAAGCTTCGGCCCTGCTGTCATATTCAACAACGAGAAAGCATGGGATGACCAGTGGATCTTCTGGGTTGGACCTTTCATCGGTGCAACCATTGCTGCAGTCTACCACCAGTACGTATTGAGAGCACAAGCGGCAAAGGCTCTCGGGTCATTCAGGAGCTCCCCACACCTGTAA 855 0.5661 MAKDIETEVRTELTHKDYYDPPPTPFYDAAELRKWSFYRALIAEFVATLLFLYVTILTVIGYNHQIHVGDSCDGVGILGIAWSFGGMIFVLVYCTAGISGGHVNPAVTFGLFLARKVSLVRAIAYMVAQCLGAICGVGLVKAFQKSYYNRYKGGVNLLSDGYSKGAGLGAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNEKAWDDQWIFWVGPFIGATIAAVYHQYVLRAQAAKALGSFRSSPHL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02368 284 NCBIfam MIP family channel protein 43 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g02368 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 278 IPR034294 -
Viun1g02368 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g02368 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g02368 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g02368 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g02368 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g02368 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g02368 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Viun1g02368 284 Gene3D Glycerol uptake facilitator protein. 24 283 IPR023271 -
Viun1g02368 284 CDD MIP 39 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g02368 284 SUPERFAMILY Aquaporin-like 31 268 IPR023271 -
Viun1g02368 284 FunFam Probable aquaporin PIP1-2 24 282 - -
Viun1g02368 284 Pfam Major intrinsic protein 31 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02368 Viun-Chr1 34126139 34128403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02368 1 284 Major Intrinsic Protein MIP AT2G37170 77.003 4.79e-163 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02368 K09872 - gmx:100807883 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02368 1 34126139 34128403 Viun7g02911 7 32333864 32336725 ECH
Viun1g02368 1 34126139 34128403 Viun1g02368 1 34126139 34128403 ECH
Viun1g02368 1 34126139 34128403 Viun5g03398 5 44235716 44237373 ECH