Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02366 ATGAAGATTCCCTGTTGTTCTTTTTGTACTTGTTTCTCAGCATCGGTCAAAGAACAAGAAACTAAGCACGGTGAAGAGAACGATGGAAACTTTCGCACATTCACTTACAGAGAATTGAATTCTGCCACGCGGGGTTTTCATCCCTCGGAAAAGATCGGAGAAGGAGGCTTCGGCTCTGTCTATAAGGGGCAGCTTCGGGATGGAAGTTTGGTGGCTGTTAAAGTGCTCTCGATTGAGCTAGATTCCGTAAAAGGAGAGAGGGGTTTTGTAGCAGAATTGAATACACTTGCAAATGTGAAGCACCAAAATCTAGTTATTCTTCGAGGGTGTTGTGTTGAAGGAGCCCACAGATACATAGTCTACGATTATATGCAAAACAATAGCCTTCGTCACACTTTCTTAGGTTCTGAGGAAAAAAGAATGACATTCAGCTGGGAGGCTCGGAGAGATGTATCAGTAGGTGTGGCTAGAGTGCTTGCTTTTCTTCATGAGGAACTTCAACCCCATATTGTGCACAGAGATATCAAATCCAGCAATGTTCTTCTTGATGAAAATTTCACACCAAAAGTCTCAGATTTTGGCCTGGCCAAGCTACTGAGAGATGAAAAATCCCACATCAGTACCCAAGTTGCAGGCACATTAGGTTATCTTGCTCCGGAATACGCCAGTTCTGGCCACCTGACACGAAAATCAGATGTTTATAGTTTTGGAGTACTGCTTCTAGAAATTGTGAGTGGCCAAAGAGCAGTAGATGATCGTTGTTTCATAGTTGAGAAGTCTTGGGCTGCGTACGAGGGTAATGATCTTCTGAGAATGGTGGATCCAATGCTGAAGATGAACTATCCCATGGAAGAAGCTAAACGGTTTCTAATGGTGGGGCTTTGTTGCGTGCAAGAAACGGCCAGGGTGAGGCCACGAATGTCAGAGGTTGTAGACATGTTGAGCAAAAACATTGAGATGGAAGAGTTTAATGTTTCACGACCAGGATTTGTGAATGACATGAGGAACGCCGGAACGAGGAGGCAAATAAATTCGTCAGAGGAATCAAGTGCAGCAGCATCCTTTGCAGATTCCTCGGGATGGAGTACCACCAATCTTGCTCGTTAG 1107 0.4444 MKIPCCSFCTCFSASVKEQETKHGEENDGNFRTFTYRELNSATRGFHPSEKIGEGGFGSVYKGQLRDGSLVAVKVLSIELDSVKGERGFVAELNTLANVKHQNLVILRGCCVEGAHRYIVYDYMQNNSLRHTFLGSEEKRMTFSWEARRDVSVGVARVLAFLHEELQPHIVHRDIKSSNVLLDENFTPKVSDFGLAKLLRDEKSHISTQVAGTLGYLAPEYASSGHLTRKSDVYSFGVLLLEIVSGQRAVDDRCFIVEKSWAAYEGNDLLRMVDPMLKMNYPMEEAKRFLMVGLCCVQETARVRPRMSEVVDMLSKNIEMEEFNVSRPGFVNDMRNAGTRRQINSSEESSAAASFADSSGWSTTNLAR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02366 368 FunFam Putative LRR receptor-like serine/threonine-protein kinase 124 326 - -
Viun1g02366 368 FunFam Serine/threonine-protein kinase receptor 15 123 - -
Viun1g02366 368 Gene3D Phosphorylase Kinase; domain 1 7 123 - -
Viun1g02366 368 CDD STKc_IRAK 52 316 - -
Viun1g02366 368 SUPERFAMILY Protein kinase-like (PK-like) 28 339 IPR011009 -
Viun1g02366 368 SMART serkin_6 46 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02366 368 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02366 368 Pfam Protein tyrosine and serine/threonine kinase 49 314 IPR001245 GO:0004672|GO:0006468
Viun1g02366 368 Gene3D Transferase(Phosphotransferase) domain 1 124 328 - -
Viun1g02366 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Viun1g02366 368 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Viun1g02366 368 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02366 Viun-Chr1 34102741 34104709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02366 33 333 Receptor kinase-like Gene Family AT1G56120 50.327 8.99e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g02366 PK_Tyr_Ser-Thr 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02366 - - gmx:100785251 559.681