Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02365 ATGAAGATTCCCTGTTGTTCTTTTTGTACTTGTTTCTCAGCATCGGTCAAAGAACAAGAAACTAAGCACGAAGAGCCAGGTGAAGAGAACGATGGAAACTTTCGCACATTCACTTACAGAGAATTGAATTCTGCCACGCGGGGTTTTCATCCCTCGGAAAAGATCGGAGAAGGAGGCTTCGGCTCTGTCTATAAGGGGCAGCTTCGGGATGGAAGTTTGGTGGCTGTTAAAGTGCTCTCGATTGAGCTAGATTCCGTAAAAGGAGAGAGGGGTTTTGTAGCAGAATTGAATACACTTGCAAATGTGAAGCACCAAAATCTAGTTATTCTTCGAGGGTGTTGTGTTGAAGGAGCCCACAGATACATAGTCTACGATTATATGCAAAACAATAGCCTTCGTCACACTTTCTTAGGTTCTGAGGAAAAAAGAATGACATTCAGCTGGGAGGCTCGGAGAGATGTATCAGTAGGTGTGGCTAGAGTGCTTGCTTTTCTTCATGAGGAACTTCAACCCCATATTGTGCACAGAGATATCAAATCCAGCAATGTTCTTCTTGATGAAAATTTCACACCAAAAGTCTCAGATTTTGGCCTGGCCAAGCTACTGAGAGATGAAAAATCCCACATCAGTACCCAAGTTGCAGGCACATTAGGTTATCTTGCTCCGGAATACGCCAGTTCTGGCCACCTGACACGAAAATCAGATGTTTATAGTTTTGGAGTACTGCTTCTAGAAATTGTGAGTGGCCAAAGAGCAGTAGATGATCGTTGTTTCATAGTTGAGAAGTCTTGGGCTGCGTACGAGGGTAATGATCTTCTGAGAATGGTGGATCCAATGCTGAAGATGAACTATCCCATGGAAGAAGCTAAACGGTTTCTAATGGTGGGGCTTTGTTGCGTGCAAGAAACGGCCAGGGTGAGGCCACGAATGTCAGAGGTTGTAGACATGTTGAGCAAAAACATTGAGATGGAAGAGTTTAATGTTTCACGACCAGGATTTGTGAATGACATGAGGAACGCCGGAACGAGGAGGCAAATAAATTCGTCAGAGGAATCAAGTGCAGCAGCATCCTTTGCAGATTCCTCGGGATGGAGTACCACCAATCTTGCTCGTTAG 1116 0.4453 MKIPCCSFCTCFSASVKEQETKHEEPGEENDGNFRTFTYRELNSATRGFHPSEKIGEGGFGSVYKGQLRDGSLVAVKVLSIELDSVKGERGFVAELNTLANVKHQNLVILRGCCVEGAHRYIVYDYMQNNSLRHTFLGSEEKRMTFSWEARRDVSVGVARVLAFLHEELQPHIVHRDIKSSNVLLDENFTPKVSDFGLAKLLRDEKSHISTQVAGTLGYLAPEYASSGHLTRKSDVYSFGVLLLEIVSGQRAVDDRCFIVEKSWAAYEGNDLLRMVDPMLKMNYPMEEAKRFLMVGLCCVQETARVRPRMSEVVDMLSKNIEMEEFNVSRPGFVNDMRNAGTRRQINSSEESSAAASFADSSGWSTTNLAR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02365 371 Pfam Protein tyrosine and serine/threonine kinase 52 317 IPR001245 GO:0004672|GO:0006468
Viun1g02365 371 FunFam Putative LRR receptor-like serine/threonine-protein kinase 127 329 - -
Viun1g02365 371 Gene3D Transferase(Phosphotransferase) domain 1 127 331 - -
Viun1g02365 371 SUPERFAMILY Protein kinase-like (PK-like) 31 342 IPR011009 -
Viun1g02365 371 ProSiteProfiles Protein kinase domain profile. 49 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02365 371 SMART serkin_6 49 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g02365 371 Gene3D Phosphorylase Kinase; domain 1 9 126 - -
Viun1g02365 371 CDD STKc_IRAK 55 319 - -
Viun1g02365 371 FunFam Serine/threonine-protein kinase receptor 18 126 - -
Viun1g02365 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Viun1g02365 371 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Viun1g02365 371 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02365 Viun-Chr1 34102741 34104709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02365 36 336 Receptor kinase-like Gene Family AT1G56120 50.327 1.18e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g02365 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02365 - - gmx:100790388 561.607