Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02364 ATGGGCAACGTCTCAAGCGGTGGCGCCAACCACCGTCGCCGACACAGCGGAGCGATAAGGCGGAGTCACCCGCCGCCTCCACCGCCGGTGACGCCGCAGCCTGAGATCGCCGCGAATCCGTTCGTGTACCATGGTGCCGCACCTTATCCGAACCCTACCCTGCATTACCCGCAGTACCATTACCCCGGTTACTACCCTCCGGCGCCTCCCATACCTCATCAGCATCATCATCAACAGCATCAACATCATCATCTACAGCATCAACATCATCATCCACAAAATCAACATCAACATCATCTGCACATGGACCCGGCGTGGATTCCAGGGCGTTACCCTTGTGGGCCCGTGATGCCTAACCCTGCACCTTTTGTTGAGCACCAGAAGGCCGTTACCATAAGGAACGATGTCAATATCAGGAAAGAGAGTCTTAGGCTTGAACCTGATGAGGGAAATTCTTCCCACTTCCTTATCTCGTTTTCCTTCGATGCCACCGTTTCTGGGAGCGTCACCATTTATTTCTTTGCAAAAGAAGGTGAAGACTCCATCCTCACACCAGTGAAGGAAAACAATCCTGCTCCACTGACAGTGAACTTTGAGCAAGGTCTTGGCCAGAAGTTTAAGCAGCCATCTGGAACTGGTATTGATTTTTCTGTTTTTGAGGAGTCCGAGTTACTGAAAGTGGGTGATATGGATGTGTACCCCCTAGCGGTAAAGGCAGACGCATCCCCTGGTAATCATGATGAGTCAGATAGAACTCCAGCATCTGGTAGCACAAACTCACAGATTACCCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTATTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGCATTGGAAATTCAACAGAAGCTGACTTGGATGAGAGTGACCAAGGAAAAGAATGTGTTATCTGCTTGTCGGAGCCTCGAGATACAATTGTTCATCCCTGCCGCCATATGTGTATGTGTAGTGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTGGAGAGGCTTTTGGAGATAAAGGTGGGGTCTGAGGAGTGA 1110 0.4982 MGNVSSGGANHRRRHSGAIRRSHPPPPPPVTPQPEIAANPFVYHGAAPYPNPTLHYPQYHYPGYYPPAPPIPHQHHHQQHQHHHLQHQHHHPQNQHQHHLHMDPAWIPGRYPCGPVMPNPAPFVEHQKAVTIRNDVNIRKESLRLEPDEGNSSHFLISFSFDATVSGSVTIYFFAKEGEDSILTPVKENNPAPLTVNFEQGLGQKFKQPSGTGIDFSVFEESELLKVGDMDVYPLAVKADASPGNHDESDRTPASGSTNSQITQAVFEKEKGEFRVKVIKQILWVNGMRYELQEIYGIGNSTEADLDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGSEE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02364 369 FunFam probable E3 ubiquitin-protein ligase LOG2 299 364 - -
Viun1g02364 369 MobiDBLite consensus disorder prediction 21 35 - -
Viun1g02364 369 MobiDBLite consensus disorder prediction 75 96 - -
Viun1g02364 369 PANTHER MAHOGUNIN 1 364 IPR045194 GO:0061630
Viun1g02364 369 MobiDBLite consensus disorder prediction 65 97 - -
Viun1g02364 369 MobiDBLite consensus disorder prediction 1 36 - -
Viun1g02364 369 SMART ring_2 315 353 IPR001841 -
Viun1g02364 369 SUPERFAMILY RING/U-box 314 359 - -
Viun1g02364 369 CDD mRING-HC-C3HC5_MGRN1-like 313 354 IPR045195 -
Viun1g02364 369 Pfam Zinc finger, C3HC4 type (RING finger) 313 359 - -
Viun1g02364 369 ProSiteProfiles Zinc finger RING-type profile. 315 354 IPR001841 -
Viun1g02364 369 MobiDBLite consensus disorder prediction 239 260 - -
Viun1g02364 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 364 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02364 Viun-Chr1 34093374 34098362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02364 35 334 C3H Transcription Factor Family AT3G09770 54.341 1.75e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02364 - - gmx:100807343 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02364 1 34093374 34098362 Viun1g02364 1 34093374 34098362 ECH
Viun1g02364 1 34093374 34098362 Viun7g00908 7 8494035 8497948 PCT