Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02360 ATGTTCAATGTTATCGGTTTTTCGTTATTGACGATGGATTCCGTGGCCTACAGAGGATTGTTCTACACATTCTTCATACTCAATTTCGTTTTGGTCTGCCAACTCATTCTCCTTCACCCTCTCGCTTCCGCTGAAAATGCTGCTGAGTTGTTTGAGCGGGTATCGCAAAGCATAAAAGTGAAACACTATACTGAGGCACTTGATGATCTAAATGCTGCAATAGAAGCAGACCCAACCCTTTCAAAAGCATACCTTTTCAGAGCCTCAGTTCTTCGTCAGATATGCAGATATGAGCAATCCGAGAGGAGCTACAAACAGTTTCTGGAGTTGAAGCCTGGAGATTCAGCTGCAGAAAAGGAACTCTCTCAACTATTGCAGGCTCAAAGTGCCCTAGAAACAGCTCAGTCCCTCTATGATTTGGGCAACTTCTCAAAATCCTTGGACTTTATTGATAAAGTTGTTCTTGTTTTCTCTCCAGATTGCACTAAGGCCAAGCTTCTTAAAGTGAAGGTGTTAATAGCTGATAAAGACTATGAGGGTGCCATTGCTGAGTCTGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTATTATTTAGCTGATCATGATGTTGCCACGAGGCATTTTCAGAAAGGTCTTCGCTCAGATCCAGAGCACAGTGAACTGAAAAAAGCATATTTTCGATTGAAAAATCTACTGAAGAAGAGTAAAAGTGCTGAAGATAATGCGAGTAAGGGTAAACTACGTGTGTCAGTGGAAGAATTCAAAGTTGCTCTTGCTGTAGACCCAGACCATCTTGCGCACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGAAAGTTGTAGTGAAGCTCTTAAGATCAATGAGGAACTTGTTGAAGCTCTTGTTCAGAGAGGAGAGGCTAAGCTCTTAGTAGAAGATTGGGAGGGAGCTGTGGATGATATGAAATCAGCTGCTCAAAAATCTCCTCAGGATATGAGTATCCGTGAAGCATTAATGAGGGCGGAGAAAGCTTTAAAGATAAGCAAACGTAAGGATCACTACAAGACTTTGGGAATTTCTAAAACTGCTTCTGCTGCTGATATAAAACGTGCCTACAAGAAACTAGCCTTACAATGGCACCCAGATAAGAATGTGGACAAAAGAGAAGAAGCAGAAGCTAAATTCCGAGAAATTGCTGCTGCATATGAGGTTCTGAGCGATGAAGACAAACGTGTAAGATATGACAGGGGGGAGGACCTTGAAGAGATGGGAGGTGGCGGCGGCGGTGGTTTCAACCCTTTTGGTGGTGGGGGCCAGCAGTTTACCTTTAACTTTGAGGGTGGCTTCCCTGGTGGTGGTGGATTTGGAGGGGGCTTTCCTGGAGGGTTTGAATTTCACTTCTGA 1452 0.4325 MFNVIGFSLLTMDSVAYRGLFYTFFILNFVLVCQLILLHPLASAENAAELFERVSQSIKVKHYTEALDDLNAAIEADPTLSKAYLFRASVLRQICRYEQSERSYKQFLELKPGDSAAEKELSQLLQAQSALETAQSLYDLGNFSKSLDFIDKVVLVFSPDCTKAKLLKVKVLIADKDYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRSDPEHSELKKAYFRLKNLLKKSKSAEDNASKGKLRVSVEEFKVALAVDPDHLAHNVHLHLGLCKVLVKLGRGKDALESCSEALKINEELVEALVQRGEAKLLVEDWEGAVDDMKSAAQKSPQDMSIREALMRAEKALKISKRKDHYKTLGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRVRYDRGEDLEEMGGGGGGGFNPFGGGGQQFTFNFEGGFPGGGGFGGGFPGGFEFHF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02360 483 Gene3D Tetratricopeptide repeat domain 42 365 IPR011990 GO:0005515
Viun1g02360 483 ProSitePatterns Nt-dnaJ domain signature. 411 430 IPR018253 -
Viun1g02360 483 SMART dnaj_3 367 426 IPR001623 -
Viun1g02360 483 SMART tpr_5 81 114 IPR019734 GO:0005515
Viun1g02360 483 SMART tpr_5 47 80 IPR019734 GO:0005515
Viun1g02360 483 SMART tpr_5 280 313 IPR019734 GO:0005515
Viun1g02360 483 SMART tpr_5 314 347 IPR019734 GO:0005515
Viun1g02360 483 SMART tpr_5 127 160 IPR019734 GO:0005515
Viun1g02360 483 SMART tpr_5 196 229 IPR019734 GO:0005515
Viun1g02360 483 SUPERFAMILY TPR-like 44 363 IPR011990 GO:0005515
Viun1g02360 483 Pfam DnaJ domain 368 431 IPR001623 -
Viun1g02360 483 PRINTS DnaJ domain signature 370 388 IPR001623 -
Viun1g02360 483 PRINTS DnaJ domain signature 406 426 IPR001623 -
Viun1g02360 483 PRINTS DnaJ domain signature 388 403 IPR001623 -
Viun1g02360 483 PRINTS DnaJ domain signature 426 445 IPR001623 -
Viun1g02360 483 ProSiteProfiles TPR repeat profile. 196 229 IPR019734 GO:0005515
Viun1g02360 483 ProSiteProfiles dnaJ domain profile. 368 434 IPR001623 -
Viun1g02360 483 Gene3D DnaJ domain 366 473 IPR036869 -
Viun1g02360 483 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 23 483 IPR044620 -
Viun1g02360 483 FunFam DnaJ domain containing protein 39 365 - -
Viun1g02360 483 CDD DnaJ 368 423 IPR001623 -
Viun1g02360 483 ProSiteProfiles TPR repeat profile. 81 114 IPR019734 GO:0005515
Viun1g02360 483 FunFam DnaJ subfamily C member 7 366 474 - -
Viun1g02360 483 SUPERFAMILY Chaperone J-domain 362 471 IPR036869 -
Viun1g02360 483 Coils Coil 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02360 Viun-Chr1 34064065 34068264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02360 364 431 C2H2 Transcription Factor Family AT1G74250 47.222 5.69e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02360 K09523 - gmx:100804685 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02360 1 34064065 34068264 Viun1g02360 1 34064065 34068264 ECH