Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02359 ATGCAAATGATACCCAGTGACCCCTTTTCACTTTCCACTACTCTCCCAGGGCTTCCCAATGAACAAAACACAAACCCTAACCCTAATCCTCCTCCTCCACTCACCAAGAAGAAGAGAAATCTTCCAGGAACACCAGATCCAGATGCTGAGGTTATTGCTCTTTCACCCAAGACTCTCATGGCCACCAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTTCATAGGAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAAGAGGTTCGGAAGAAGGTATATATCTGTCCAGAGAAGACCTGTGTCCACCACCACGCCGCCAGGGCTCTCGGAGACCTCACCGGAATAAAAAAGCACTATAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAAAAATACGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACCTGTGGCACCAGAGAGTATAAGTGCGACTGTGGCACCCTCTTCTCCAGGAAAGACAGCTTTATTACTCACAGGGCTTTCTGCGATGCCTTAGCCGAAGAGAGTTCGAGACTTTCCTCAGTAGCTACCAGTAGTCTAAATTTCAAGAGCGAAGATGCAAGTGTGATGAATACACAAGCTGGTTTGTCGTCACGTGGATTAATCACTGGTCAGGGAATGCAGAGTGTTCCACACTTTGGTCCACACGGGTTTCGTTTAATGGGGATGGGTGCAGACCAACAAAGACCAAACTTGTCACTGTGGTTGAATCAGGGACATCACATTAATAACCCACTTGATGTGCCATCATCAAGTTCCTCAGGTTTGCCCGAGGTTGTGCAAATGGCACAAGCTATTGGTTCTTCTTCTTCAGTATTCTCAAATTTCGGAACCAATTCAAAGGGAGAAGGTGGAGCTTCAGATTTGGCATCAATTTATTCTGAGAGTCAAAACAAGAACTCGATCTCAGCTTCCCCAATGTCAGCCACTGCCCTTCTGCAGAAGGCAGCACAAATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGTGGCAGTTTTGGAGTGATGAGCTCATCCTCAACCCAAACTACCACTCTCAATAATACCAATGCAAACCAAAGCAGTGACCAGCTCAACCAAGTGTTTCAGAACATGAACCAACAGCAAAATTTCAATGGAACAAGCAGCAGTGCAACTATGTTAGGCCATTCTACTAACTTTCCCTCATTGACACATCCATCAAACAGTTTTGATCAGTTTCTGATGCAAAACAACGTGGAAGCAACTCAGATAAACCTCCATCCAGGCTCAAACACAGTGGAACATAACTTGACGAGAGATTTTCTTGGCATGAACAGAAATGGAGGTGGACATCCATTTCTACCTCAAGAGCTTGCAAAGTTTGCTTCCTTAGGGTCATCAATGGGTTTGAACCAATTCACTGCAGGCCATCAATGA 1482 0.4575 MQMIPSDPFSLSTTLPGLPNEQNTNPNPNPPPPLTKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHHAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESSRLSSVATSSLNFKSEDASVMNTQAGLSSRGLITGQGMQSVPHFGPHGFRLMGMGADQQRPNLSLWLNQGHHINNPLDVPSSSSSGLPEVVQMAQAIGSSSSVFSNFGTNSKGEGGASDLASIYSESQNKNSISASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQTTTLNNTNANQSSDQLNQVFQNMNQQQNFNGTSSSATMLGHSTNFPSLTHPSNSFDQFLMQNNVEATQINLHPGSNTVEHNLTRDFLGMNRNGGGHPFLPQELAKFASLGSSMGLNQFTAGHQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02359 493 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Viun1g02359 493 MobiDBLite consensus disorder prediction 23 38 - -
Viun1g02359 493 SMART c2h2final6 65 87 IPR013087 -
Viun1g02359 493 SMART c2h2final6 141 161 IPR013087 -
Viun1g02359 493 SMART c2h2final6 106 136 IPR013087 -
Viun1g02359 493 MobiDBLite consensus disorder prediction 1 22 - -
Viun1g02359 493 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Viun1g02359 493 FunFam protein indeterminate-domain 12-like 44 112 - -
Viun1g02359 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Viun1g02359 493 Gene3D Classic Zinc Finger 121 198 - -
Viun1g02359 493 Gene3D Classic Zinc Finger 43 120 - -
Viun1g02359 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 466 IPR031140 -
Viun1g02359 493 MobiDBLite consensus disorder prediction 1 48 - -
Viun1g02359 493 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Viun1g02359 493 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02359 Viun-Chr1 34054473 34056906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02359 1 290 IDZ Gene Family AT5G03150 59.688 9.07e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02359 zf-C2H2_jaz 7.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02359 K25870 - gmx:100789331 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02359 1 34054473 34056906 Viun1g02359 1 34054473 34056906 ECH
Viun1g02359 1 34054473 34056906 Viun7g00901 7 8440912 8444370 PCT