Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02358 ATGGACAAAGATGGTAATTCAGAAATCCAACTCCCTCCTGGGTTTAGATTCCACCCTTCTGATGAAGAGCTGATCATTCACTATCTGAGAAACAAAGTGACATCATCACCTCTTCCTGCCTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCCAAAGTAAGGCTTTGTTTGGGGAGGATGAATGGTATTTCTTTACTCCCAGAGACAGGAAGTATCCCAATGGAGTGAGGCCTAATAGAGCAGCTGCTTCTGGTTATTGGAAAGCTACTGGCACTGACAGACCCATTTTTTCTTCATGTGGAATGAAGAATATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGTCGAGCACCAAAAGGATCTAAAACTGATTGGATCATGCACGAGTACAGGTTGCACAATTCCATGAACTTCATTCCACAGCAAAGAGGATCCATGAGACTGGATGAGTGGGTGCTGTGCCGGGTCCGACAGAAAACTAGCAGCACAAGAAGCATTTGGGAAGACTCTATTTATGAAGCACCAACCCACTTTGAAGAGATGAATGAGAACTCAAATCCTGAACCAGCCAAAAATTGTGTGCATAATGAATATCCAATGTTGCCTTATATTCTCGCTTCTCAGAGTTCTGTGTCTGATTCTATTGGCGTAGCCTCAGGCTCGGGCTGTGGTTGTAATGATGATGGAAAAGCATATGCTTCATTGCATAATAAGAACTCGAATGTAATAATTGGAGCACCGTTTATGACACCTCAGGGTTTGTTTAATCCACTGAAGAGAAAAAACATTGAAGAGAAGGAGTTGGACTTGTATGCTTCACTCAATAAAAAACTAAGCGAAGAACTTGATGTTGGGAAAGAAAAACTCGAGCGTGATCTGAACAAAGACTACAATTTTAATAACTTGGAACACTGGAGTTCCATCATACAACCCCAAGAGCTTAATATCGTAGCCTTTTCGAAATATGCATGA 990 0.4162 MDKDGNSEIQLPPGFRFHPSDEELIIHYLRNKVTSSPLPASFIAEIDLYKYNPWELQSKALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDRPIFSSCGMKNIGVKKALVFYKGRAPKGSKTDWIMHEYRLHNSMNFIPQQRGSMRLDEWVLCRVRQKTSSTRSIWEDSIYEAPTHFEEMNENSNPEPAKNCVHNEYPMLPYILASQSSVSDSIGVASGSGCGCNDDGKAYASLHNKNSNVIIGAPFMTPQGLFNPLKRKNIEEKELDLYASLNKKLSEELDVGKEKLERDLNKDYNFNNLEHWSSIIQPQELNIVAFSKYA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02358 329 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Viun1g02358 329 Gene3D NAC domain 20 169 IPR036093 GO:0003677|GO:0006355
Viun1g02358 329 FunFam NAC domain-containing protein 72-like 20 170 - -
Viun1g02358 329 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Viun1g02358 329 Coils Coil 281 301 - -
Viun1g02358 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 229 - -
Viun1g02358 329 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02358 Viun-Chr1 34039212 34040797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02358 6 172 NAC Transcription Factor Family AT1G69490 65.868 3.97e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g02358 NAM 2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02358 - - gmx:100788799 537.339