Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02348 ATGGGGCATAGGCATGTATATAACACATCTCCATTGTTTGAGGGTGAGCCTGACCAGAACTGGAATCATATGCACATTGATCAACACTATGTGCACCTTGGTAGAACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGCGGAAAATATGTCTATAGATAGCATTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGATATGCATCCTCAGGTCACAACATTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATAATGATCATTTTGTGCATTCGTCTAATGCTGGAGCATTCTTTACATTGTCAGATAATCACGTACACCAACCTTCTTCTTCCAATTATGACAGACATACATTTCATGTTGATAGTAGTTTTGTTGATCTTACAATGGGAAGTGGACAAGGCCCTCTCAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTACGAGAGAGGCAGTACAAGTAGATACTTCAATGCTGGAAGTTCAACTGATCTTCCTATATCTTCGGAATTATGGCAGGATAAGCCAAATATTGATTCTCAATATATGCCCTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGCTCCGCACTTGATTTGGATTCCCACCCATCAAGGACCCATTTATCCACTACTAATCATTCACACACTTCCTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGCTTCTGGTCAGACTTCTACATTGACAAGGGATTGGAGCCAAATGAACATATCTTCAGCTAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGAGACAAGCCATTTCCTTGTTGGAAGTGGTGCTACTGTTAGCAATGCTTCTTTAGATGTTGGGTATTTCCATCATGAATTTGGTACAAGCAGAAATCATGCTCCTACTCCAAGTTTTCAAAATAATCAAACTCAGAATGCTAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCAACTTTTGGGGCTTCTTCAAGCTTGCGCATGGGACATGTGACATCTTTGGATGAAGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAGCACCCTTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCGAGTCAAAGATATCGCACATTGACTGAGGAGAGTGGTCTTGCCGAACGGTTTGCTTCTGAGGGTTTCTTGGTTGTTGAGCGTGCATCGGTGTATGATTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTATGAGGACTTACTTGCACTGGGTGAAAGGATTGGCAATGTGAACACAGGACTCTCCGAGGACATGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAACTGCGTAATATGTCTGGAAGAGTACAAGAACATGGACGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTGTGAAGAAATTATGCCCTATCTGCAAAGCTTCTGCTTTGGCTGAGGATACAAAGGATAAATAA 1656 0.4227 MGHRHVYNTSPLFEGEPDQNWNHMHIDQHYVHLGRTSTSENGSFIYPAENMSIDSISFPSHWNSSTRSNGYASSGHNIDVPPHQPDASGTSNNDHFVHSSNAGAFFTLSDNHVHQPSSSNYDRHTFHVDSSFVDLTMGSGQGPLKRKSPGISPVYERGSTSRYFNAGSSTDLPISSELWQDKPNIDSQYMPWDHFTMTPTFRGTGLSIKGEGSLRNVRSRSALDLDSHPSRTHLSTTNHSHTSYPTLPPVDHSSLVDASGQTSTLTRDWSQMNISSANGRVLLPDTSAFGLETSHFLVGSGATVSNASLDVGYFHHEFGTSRNHAPTPSFQNNQTQNARGIQSNYSQRSTPTFGASSSLRMGHVTSLDEGLPMVAESYSSRHPRPLSTLGWRNGDRNGRSRISSQRYRTLTEESGLAERFASEGFLVVERASVYDSRNMLDQHREMRMDIDNMSYEDLLALGERIGNVNTGLSEDMFSKCLTETIYCSSEQSQDEGNCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSVKKLCPICKASALAEDTKDK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02348 551 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 95 544 IPR045191 GO:0061630
Viun1g02348 551 SUPERFAMILY RING/U-box 488 543 - -
Viun1g02348 551 MobiDBLite consensus disorder prediction 378 398 - -
Viun1g02348 551 Pfam Ring finger domain 497 540 IPR001841 -
Viun1g02348 551 CDD RING-H2_RNF24-like 498 543 - -
Viun1g02348 551 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 463 544 - -
Viun1g02348 551 MobiDBLite consensus disorder prediction 219 244 - -
Viun1g02348 551 MobiDBLite consensus disorder prediction 138 167 - -
Viun1g02348 551 ProSiteProfiles Zinc finger RING-type profile. 498 540 IPR001841 -
Viun1g02348 551 MobiDBLite consensus disorder prediction 228 244 - -
Viun1g02348 551 SMART ring_2 498 539 IPR001841 -
Viun1g02348 551 MobiDBLite consensus disorder prediction 64 95 - -
Viun1g02348 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 544 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02348 Viun-Chr1 34017009 34025912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02348 1 550 C3H Transcription Factor Family AT2G37150 41.103 1.13e-114 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02348 - - gmx:100803627 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02348 1 34017009 34025912 Viun1g02348 1 34017009 34025912 ECH
Viun1g02348 1 34017009 34025912 Viun7g00897 7 8355665 8361646 PCT