Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02336 ATGGCCAACGAACCTTCGTTTTTGTTTTCCGGCATTCGTTTCAACAGAAAGAAGTTCGGCGCCGACATTGCCAGGTTCCAGAAAAAAGATATCGATACCGATTCGGCGAAGATTTCGAGCGTCGCCGAAGGCGAAAGCGCGAAAACGAGGGAAGCAGTAGAAGAGAAAACAGCGTCCACGAAGAAGAGGAAGCGCAAGGGAAACACTTCCGAAAATGTTGAAGGATTCAACGTGTTTAGAAATTCTGCATCTGTGGCGCGGTCCATTGGTGATGTTCAAGCTGATGAGGAGTCTATTGAGCTGAAAAAGAAGAAGAATAAGAAGGAACAAAATCAACAACTCGAGCGAGACGCGATATTCAGAAAACAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAGTTGAAATCAAGATATAAGTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAAAGAACCAACGCCTATTCAGAGACAGGCTATTCCAGTACTTTTAGATGGTCGTGAATGCTTTGCTTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGCTTATGAAGCTTAAGGACCCAGAAAAGGGTGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTGCTCAAATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAAAAAAATTTGGTATTAAGTTAATGACTAAAAATCTCTTACGAAATGCTGATTTTTCGAAGTTTCCATGTGATATACTAATATCCACACCACTCCGATTACGCTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTGGATGAATCGGATAAGCTTTTTGAGCCCGAATTATTCAAGCAAATTGATTCTGTTCTCAAGGCATGCTCCAACCCCTCAATCATCCGCTCGCTTTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGTGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGTAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGTTGTACGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTCAACAAGAGCGAGAAAATGCTGTCGACAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGAATGGATTTCAAAGGAGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATACGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGGCTCATGGATTTGCAAAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGACCTATAA 1608 0.4248 MANEPSFLFSGIRFNRKKFGADIARFQKKDIDTDSAKISSVAEGESAKTREAVEEKTASTKKRKRKGNTSENVEGFNVFRNSASVARSIGDVQADEESIELKKKKNKKEQNQQLERDAIFRKQHNIHVSGYNVPSPLQSFDELKSRYKCPSYLLRNLKELGFKEPTPIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPEKGGIRAVILCHTRELSAQIFRECKKLAKRKKFGIKLMTKNLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRVEYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRSGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLMDLQKKKWKKHRPKRDSISTKPDL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02336 535 MobiDBLite consensus disorder prediction 34 73 - -
Viun1g02336 535 Gene3D - 343 520 IPR027417 -
Viun1g02336 535 Pfam DEAD/DEAH box helicase 166 330 IPR011545 GO:0003676|GO:0005524
Viun1g02336 535 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Viun1g02336 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 488 IPR027417 -
Viun1g02336 535 SMART helicmild6 395 476 IPR001650 -
Viun1g02336 535 Pfam Helicase conserved C-terminal domain 373 476 IPR001650 -
Viun1g02336 535 Coils Coil 92 114 - -
Viun1g02336 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 343 IPR014001 -
Viun1g02336 535 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 77 521 - -
Viun1g02336 535 CDD SF2_C_DEAD 355 485 - -
Viun1g02336 535 CDD DEADc_DDX52 153 346 IPR044764 GO:0003724|GO:0005524|GO:0030490
Viun1g02336 535 MobiDBLite consensus disorder prediction 47 70 - -
Viun1g02336 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 515 IPR001650 -
Viun1g02336 535 SMART ultradead3 161 358 IPR014001 -
Viun1g02336 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 132 422 IPR014013 GO:0005524
Viun1g02336 535 Gene3D - 90 342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02336 Viun-Chr1 33976602 33980422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02336 136 514 Eukaryotic Initiation Factors Gene Family AT3G19760 30.971 8.38e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02336 K14779 - gmx:100800969 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02336 1 33976602 33980422 Viun1g02336 1 33976602 33980422 ECH