Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02327 ATGCACGGAACACCAGAAGAAGAGACGGTGCGGAGGATCGGATACGAATCCATGGACCAATCCAGGTTAATGGAAGTACTCGACATTTACTTTCCTGAACAGCTCTTAACCGTCGAGAATACCTGGTTCAATCTCGCTTCCTCTCTTTTTTCCTTCTTTTCTTCACCGGTGGGACAAAACCTTGTTTCTCAGGTGAAAAGTGGTTATGGAAACCATATCTTGTCGCTTGACTTTCAGCAGTTCCAACAGATTTGTCATGTTGAGGAATTTTATAAAATGTTAGAGGAGAAACCTAAAATTGCTCTCGCATGCATGAGTGCTGCTGTACATAAGGTTTTGCTTTCCAAATCGGAGAATGACGATCTGGTGCTTGGTGCAAAGGTTGATGTTCGTCTTCATAACTGTCCTAAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAACTGGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCGCTGGTGGTGCAAATGTTTTTTGAATGCTGTAAATGTAGACAACCAATTTCACGTAAATTTCCTGATGGCAAGTATTCTCCACCATCAACTTGCAATTTAAACGGCTGCAAGAGCAAAATCTTTAATCCGTTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACATGAAGACCATGAAGAAGGACGAGTGCCTCGAACAGTGGAATGCGAGCTTACCCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTTACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAGTCGAAGAACAGAAACCAAGGATTTTACTATCTGTATCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTCCACATCTCAGGATCTGCAGGACTCTAATCCCAAAACTAGGCCAACTGAGCTATTCGATTTGTTTTCATTTTCTTCAAAGGATTTGGAATTTGTTGCAAAGTTTAAACAGGAACACGGTCCAGATTTATTTCGCCAAATCCTTCAATCCATATGCCCATCCATCTATGGGCATGAACTTGTTAAAGCTGGGATAACTCTGTCATTATTTGGTGGAGTGCGGAAGCATTCTATGGATCAGAACAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGCCTAGGTAAGAGCCAGTTGCTACAAGCAGCTGCAGCAGTTTCTCCGCGTGGTATCTATGTCTGTGGTAATGCCACAACAAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAAGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCTTCAGAGCATCAGGCTTTACTGGAGGCGATGGAGCAACAATGTGTATCTATTGCAAAGGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCTGCTGCAAATCCTGCTGGTGGTCATTATAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTTGATTTAATTTTCATACTGCTGGACAAACCTGATGAACTTCTGGACAAGCGACTCTCGGACCACATTATGGCACTTCATGGTGGGAATGGACAACTTTCACCGGCATTGAAAAAGCGACGTGGAGATACATCTGATTCCAGAGCTACTGTATCACAAAATACTGGACCTTTAATTTCAAGATTGAGACTTGACCCAAGAGACGGTGATTTTATTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCGAGGAGTTATGTCTCTCCTAGGATGACCAAGCCAGCTGCAGAAATCTTGCAAAAGTTTTACCTAAAACTGAGGGATCATAATACTTCGGCTGACGGTACTCCTATAACAGCTAGGCAGCTGGAAAGTCTGGTAAGGCTAGCTGAAGCTCGGGCTCGGCTGGACTTGAGAGTAGAAATAACGGACCAGGATGCAACGGATGTTGTTGAAATCATGAAAGAATCCCTGTTTGATAAATATGTTGATGAGCATGGAATCGTGGATTTTGGTCGAAGTAGTGGGATGAGTCAACAAAAAGAGGCAAAACGCTTTCTGAATGCACTGAATAAGCAATCGGAATTGGAACAGAAGGATTGCTTTTCAGTATCTGAACTATACAGTCTTGCAGATAGGATTTCCTTGAAAGTACCTGATATTGACGCTTTAATCGAAAACTTAAACAGCGTTAATTGTCTACTAAAAAAAGGACCAAAGACATACCAGGTATTATCCTCTTCTTATGCACGAAGCCAAGCGTTCAAGACAAGGGGTTAA 2385 0.418 MHGTPEEETVRRIGYESMDQSRLMEVLDIYFPEQLLTVENTWFNLASSLFSFFSSPVGQNLVSQVKSGYGNHILSLDFQQFQQICHVEEFYKMLEEKPKIALACMSAAVHKVLLSKSENDDLVLGAKVDVRLHNCPKTMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVQMFFECCKCRQPISRKFPDGKYSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLEAVSIKNSKSQSTSQDLQDSNPKTRPTELFDLFSFSSKDLEFVAKFKQEHGPDLFRQILQSICPSIYGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRLSDHIMALHGGNGQLSPALKKRRGDTSDSRATVSQNTGPLISRLRLDPRDGDFIPLPGQLLRKYIAYARSYVSPRMTKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRVEITDQDATDVVEIMKESLFDKYVDEHGIVDFGRSSGMSQQKEAKRFLNALNKQSELEQKDCFSVSELYSLADRISLKVPDIDALIENLNSVNCLLKKGPKTYQVLSSSYARSQAFKTRG 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02327 794 Coils Coil 463 483 - -
Viun1g02327 794 Gene3D - 326 702 IPR027417 -
Viun1g02327 794 FunFam DNA helicase MCM8 isoform X1 169 220 - -
Viun1g02327 794 Pfam MCM AAA-lid domain 610 693 IPR041562 -
Viun1g02327 794 CDD MCM8_WHD 715 780 - -
Viun1g02327 794 Pfam MCM OB domain 142 270 IPR033762 -
Viun1g02327 794 CDD MCM8 352 692 - -
Viun1g02327 794 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02327 794 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02327 794 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02327 794 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02327 794 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 537 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02327 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 699 IPR027417 -
Viun1g02327 794 MobiDBLite consensus disorder prediction 564 584 - -
Viun1g02327 794 SMART AAA_5 392 544 IPR003593 GO:0016887
Viun1g02327 794 Pfam MCM P-loop domain 344 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02327 794 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 58 731 IPR031327 GO:0003677|GO:0005524|GO:0032508
Viun1g02327 794 SMART mcm 138 694 IPR031327 GO:0003677|GO:0005524|GO:0032508
Viun1g02327 794 Gene3D - 169 219 - -
Viun1g02327 794 Gene3D - 142 271 IPR012340 -
Viun1g02327 794 ProSiteProfiles MCM family domain profile. 348 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02327 794 SUPERFAMILY Nucleic acid-binding proteins 70 272 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02327 Viun-Chr1 33928581 33939856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02327 3 780 Core DNA Replication Machinery Family AT3G09660 69.182 0.0 1114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02327 K10737 - gmx:100784549 1335.47