Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02326 ATGCACGGAACACCAGAAGAAGAGACGGTGCGGAGGATCGGATACGAATCCATGGACCAATCCAGGTTAATGGAAGTACTCGACATTTACTTTCCTGAACAGCTCTTAACCGTCGAGAATACCTGGTTCAATCTCGCTTCCTCTCTTTTTTCCTTCTTTTCTTCACCGGTGGGACAAAACCTTGTTTCTCAGGTGAAAAGTGGTTATGGAAACCATATCTTGTCGCTTGACTTTCAGCAGTTCCAACAGATTTGTCATGTTGAGGAATTTTATAAAATGTTAGAGGAGAAACCTAAAATTGCTCTCGCATGCATGAGTGCTGCTGTACATAAGGTTTTGCTTTCCAAATCGGAGAATGACGATCTGGTGCTTGGTGCAAAGGTTGATGTTCGTCTTCATAACTGTCCTAAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAACTGGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCGCTGGTGGTGCAAATGTTTTTTGAATGCTGTAAATGTAGACAACCAATTTCACGTAAATTTCCTGATGGCAAGTATTCTCCACCATCAACTTGCAATTTAAACGGCTGCAAGAGCAAAATCTTTAATCCGTTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACATGAAGACCATGAAGAAGGACGAGTGCCTCGAACAGTGGAATGCGAGCTTACCCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTTACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAGTCGAAGAACAGAAACCAAGGATTTTACTATCTGTATCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTCCACATCTCAGGATCTGCAGGACTCTAATCCCAAAACTAGGCCAACTGAGCTATTCGATTTGTTTTCATTTTCTTCAAAGGATTTGGAATTTGTTGCAAAGTTTAAACAGGAACACGGTCCAGATTTATTTCGCCAAATCCTTCAATCCATATGCCCATCCATCTATGGGCATGAACTTGTTAAAGCTGGGATAACTCTGTCATTATTTGGTGGAGTGCGGAAGCATTCTATGGATCAGAACAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGCCTAGGTAAGAGCCAGTTGCTACAAGCAGCTGCAGCAGTTTCTCCGCGTGGTATCTATGTCTGTGGTAATGCCACAACAAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAAGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCTTCAGAGCATCAGGCTTTACTGGAGGCGATGGAGCAACAATGTGTATCTATTGCAAAGGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCTGCTGCAAATCCTGCTGGTGGTCATTATAAGATGACCAAGCCAGCTGCAGAAATCTTGCAAAAGTTTTACCTAAAACTGAGGGATCATAATACTTCGGCTGACGGTACTCCTATAACAGCTAGGCAGCTGGAAAGTCTGGTAAGGCTAGCTGAAGCTCGGGCTCGGCTGGACTTGAGAGTAGAAATAACGGACCAGGATGCAACGGATGTTGTTGAAATCATGAAAGAATCCCTGTTTGATAAATATGTTGATGAGCATGGAATCGTGGATTTTGGTCGAAGTAGTGGGATGAGTCAACAAAAAGAGGCAAAACGCTTTCTGAATGCACTGAATAAGCAATCGGAATTGGAACAGAAGGATTGCTTTTCAGTATCTGAACTATACAGTCTTGCAGATAGGATTTCCTTGAAAGTACCTGATATTGACGCTTTAATCGAAAACTTAAACAGCGTTAATTGTCTACTAAAAAAAGGACCAAAGACATACCAGGTATTATCCTCTTCTTATGCACGAAGCCAAGCGTTCAAGACAAGGGGTTAA 2052 0.4186 MHGTPEEETVRRIGYESMDQSRLMEVLDIYFPEQLLTVENTWFNLASSLFSFFSSPVGQNLVSQVKSGYGNHILSLDFQQFQQICHVEEFYKMLEEKPKIALACMSAAVHKVLLSKSENDDLVLGAKVDVRLHNCPKTMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVQMFFECCKCRQPISRKFPDGKYSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLEAVSIKNSKSQSTSQDLQDSNPKTRPTELFDLFSFSSKDLEFVAKFKQEHGPDLFRQILQSICPSIYGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYKMTKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRVEITDQDATDVVEIMKESLFDKYVDEHGIVDFGRSSGMSQQKEAKRFLNALNKQSELEQKDCFSVSELYSLADRISLKVPDIDALIENLNSVNCLLKKGPKTYQVLSSSYARSQAFKTRG 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02326 683 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02326 683 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02326 683 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02326 683 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02326 683 Coils Coil 463 483 - -
Viun1g02326 683 Pfam MCM P-loop domain 344 521 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02326 683 Gene3D - 326 516 IPR027417 -
Viun1g02326 683 Gene3D - 517 591 IPR027417 -
Viun1g02326 683 Pfam MCM AAA-lid domain 514 582 IPR041562 -
Viun1g02326 683 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 514 620 IPR031327 GO:0003677|GO:0005524|GO:0032508
Viun1g02326 683 Pfam MCM OB domain 142 270 IPR033762 -
Viun1g02326 683 SUPERFAMILY Nucleic acid-binding proteins 70 272 IPR012340 -
Viun1g02326 683 Gene3D - 169 219 - -
Viun1g02326 683 Gene3D - 142 271 IPR012340 -
Viun1g02326 683 ProSiteProfiles MCM family domain profile. 348 524 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun1g02326 683 FunFam Retrovirus-related Pol polyprotein LINE-1 327 481 - -
Viun1g02326 683 FunFam DNA helicase MCM8 isoform X1 169 220 - -
Viun1g02326 683 CDD MCM8_WHD 604 669 - -
Viun1g02326 683 SMART AAA_5 392 532 IPR003593 GO:0016887
Viun1g02326 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 588 IPR027417 -
Viun1g02326 683 SMART mcm 138 583 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02326 Viun-Chr1 33928581 33939856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02326 514 669 Core DNA Replication Machinery Family AT3G09660 82.051 1.25e-78 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02326 K10737 - gmx:100784549 879.782