Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02325 ATGGCCGACGGTCCGTCCAGTCCAGGCGGCGGCAGCCACGAGAGCGGTGACCACAGTCCCCGTTCTAACGTGCGCGAGCAGGACAGGTACCTCCCCATTGCTAACATAAGCCGCATCATGAAGAAGGCGCTTCCTGCTAACGGGAAAATTGCCAAAGACGCCAAAGAGACTGTTCAGGAGTGCGTCTCTGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGGAAGACTATTAATGGGGACGATTTGCTCTGGGCAATGGCCACCCTTGGTTTCGAGGATTATATCGATCCCTTGAAAATTTACCTCACAAGATACAGAGAGATGGAGGGTGACACCAAGGGCTCAGCCAAGGGTGGAGAGACCTCTGCTAAGAAAGATGTTCAACCGGGTCCTAGTGCTCAGCTTGCTCATCAAGGTTCTTTTTCCCAAGGGGTTAGTTACACAAATTCTCAGGGTCAACATATGATGGTTCCAATGCAAGGCCCAGAATAG 516 0.5155 MADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSAKGGETSAKKDVQPGPSAQLAHQGSFSQGVSYTNSQGQHMMVPMQGPE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02325 171 Gene3D Histone, subunit A 16 151 IPR009072 GO:0046982
Viun1g02325 171 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Viun1g02325 171 MobiDBLite consensus disorder prediction 141 164 - -
Viun1g02325 171 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Viun1g02325 171 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Viun1g02325 171 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Viun1g02325 171 MobiDBLite consensus disorder prediction 119 171 - -
Viun1g02325 171 MobiDBLite consensus disorder prediction 1 28 - -
Viun1g02325 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Viun1g02325 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 150 IPR027113 GO:0001228|GO:0006355|GO:0016602
Viun1g02325 171 FunFam Nuclear transcription factor Y subunit B-3 19 142 - -
Viun1g02325 171 SUPERFAMILY Histone-fold 27 129 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02325 Viun-Chr1 33922664 33928040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02325 17 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.874 8.47e-89 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun1g02325 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02325 K08065 - gmx:100798667 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02325 1 33922664 33928040 Viun1g02325 1 33922664 33928040 ECH
Viun1g02325 1 33922664 33928040 Viun7g01044 7 10963710 10966373 PCT