Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02321 ATGCTGGATCTTAACCTCAACGCCGATTCCCCCTCCGACAACAACTACACGCCGCCGCTCTCCATCGCGCAAATGGAGAGCTCCGGAAGCTTCAATTCCTCCGTTGTCAATGCTGCCGACACCGATGACTCCTGCTCCTACGGCGACGCCGTCGCCTACAACTTCGCCATCCTCAACAACAACACCGCTTCCTCTTCCGCCGGAGAATCCTCTGTCCGCACCATCCAGCTATTTCCGGCGACCGACTCGGGAGCCTCGCCGACATGGCTGGACTTCTCGTCGAAGGTGGATCAGCACGGTGCCGCCGCGGAGCAGAGGATCACCCCGCGGCAGCCGCTGGTGAAGAAGAGCCGCCGTGGACCGAGGTCGCGGAGCTCGCAGTATCGCGGCGTCACTTTCTATCGCAGGACTGGAAGATGGGAATCGCACATTTGGGATTGTGGCAAACAAGTGTACTTAGGTGGATTTGACACGGCGCATGCTGCGGCAAGGGCTTATGATCGAGCTGCGATCAAGTTCCGTGGGGTTGATGCGGATATCAATTTCAACGTTAGCGATTACGACGAGGATATAAAGCAGATGAGTAATTTCACGAAGGAGGAGTTTGTGCATATTCTGCGTCGACAGAGCACTGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAGTGCGGGCGATGGGAAGCTCGTATGGGGCAGTTTTTGGGTAAAAAGGTTTATTGCTGCAGGTATATATATCTTGGGCTATTCGACAGCGAGTTAGAGGCTGCAAGAGCGTATGATAGGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAACTTCGAGCCCAGCATATACGAAGGGGAGGTGATTTCCCAATCTGATAATGAAGATGGCAAGCAAAATCTTGATCTTAACCTGGGCATAGCTCCCCCTTCTTACTCTGACTCTCAAATCAAGAACACACCCAGCAACGGAAGTGGTTTGAAAGGTCCACCACCCAGCTGGGATGATATCCCTGTCGAAAAGAGATTTATGTTTGAGCACTCTGGATCGAGATCACTGAATGTTCAGCCATCTCATGGCATCTCCAGAGTATCCGGGCATCATCCTTCCGCCTGGAATGGTAGCAATTTCTTTCCCATCTACGAGGAAACAGCAATAGAGAAGAGGATGGAAGCTGGTCCCATGCCTAATTGGGCATGGCAAGTCCAAGGTCCGTATGGCGGGGCAACTCTTACTCCACCGTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGATACTCAAATTCATTTTCCAAACATGACTTTCCTCCACTCACATTTTCCACCATCGATCACCAACCCGGGCACCATATCCCCTTTCTTCATCGGTAGCTGA 1401 0.5168 MLDLNLNADSPSDNNYTPPLSIAQMESSGSFNSSVVNAADTDDSCSYGDAVAYNFAILNNNTASSSAGESSVRTIQLFPATDSGASPTWLDFSSKVDQHGAAAEQRITPRQPLVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKVYCCRYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSIYEGEVISQSDNEDGKQNLDLNLGIAPPSYSDSQIKNTPSNGSGLKGPPPSWDDIPVEKRFMFEHSGSRSLNVQPSHGISRVSGHHPSAWNGSNFFPIYEETAIEKRMEAGPMPNWAWQVQGPYGGATLTPPFSTAASSGFPSTIIPSAADTQIHFPNMTFLHSHFPPSITNPGTISPFFIGS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02321 466 Pfam AP2 domain 218 273 IPR001471 GO:0003700|GO:0006355
Viun1g02321 466 Pfam AP2 domain 127 175 IPR001471 GO:0003700|GO:0006355
Viun1g02321 466 MobiDBLite consensus disorder prediction 313 328 - -
Viun1g02321 466 Gene3D AP2/ERF domain 218 282 IPR036955 GO:0003700|GO:0006355
Viun1g02321 466 Gene3D AP2/ERF domain 126 185 IPR036955 GO:0003700|GO:0006355
Viun1g02321 466 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 74 314 - -
Viun1g02321 466 PRINTS Ethylene responsive element binding protein signature 220 231 IPR001471 GO:0003700|GO:0006355
Viun1g02321 466 PRINTS Ethylene responsive element binding protein signature 263 283 IPR001471 GO:0003700|GO:0006355
Viun1g02321 466 SUPERFAMILY DNA-binding domain 126 185 IPR016177 GO:0003677
Viun1g02321 466 ProSiteProfiles AP2/ERF domain profile. 219 281 IPR001471 GO:0003700|GO:0006355
Viun1g02321 466 MobiDBLite consensus disorder prediction 313 334 - -
Viun1g02321 466 MobiDBLite consensus disorder prediction 100 127 - -
Viun1g02321 466 ProSiteProfiles AP2/ERF domain profile. 127 183 IPR001471 GO:0003700|GO:0006355
Viun1g02321 466 CDD AP2 127 185 IPR001471 GO:0003700|GO:0006355
Viun1g02321 466 CDD AP2 218 283 IPR001471 GO:0003700|GO:0006355
Viun1g02321 466 FunFam AP2-like ethylene-responsive transcription factor 126 185 - -
Viun1g02321 466 SUPERFAMILY DNA-binding domain 218 283 IPR016177 GO:0003677
Viun1g02321 466 SMART rav1_2 219 287 IPR001471 GO:0003700|GO:0006355
Viun1g02321 466 SMART rav1_2 127 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02321 Viun-Chr1 33888258 33891187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02321 107 317 AP2-EREBP Transcription Factor Family AT4G36920 77.103 6.63e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun1g02321 AP2 4.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02321 K09284 - gmx:100808212 791.956