Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02319 ATGAATGGCTCTGGCAAGAAGGTTAGAAAGCCTTATACTATCACCAAGTCTAGGGAAAGCTGGTCTGAGGAGGAGCATGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAGGATTTTGTTGGTTCAAAGACAGTTATTCAGATTAGAAGTCATGCCCAGAAGTACTTTCTGAAGGTTCAGAAGAACGGGACAGTAGCACATGTTCCTCCTCCTCGTCCTAAGCGTAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGGTGCCATTTCCAGCTTCCCTGGCATATGTTTCTTCCACGTGGGATGAAAATTTCTTGCCCATGAATTCTGGATCCAGCAGATCACTGCCCCATCAGGATGAACTCACCAATTTTCATGGAGATGAAGCTGATATTGGATCAAAGGGGGTGACAATAATTGGCAACAGCTGTGTTAGCAATGTTGGGAACTCTACTAGAAAGTTGTCTGCTACTGAAATGCCAAAACAAGGGAAACAGACTCAGGTGCTTCATGGTTTACCAGATTTTGCTGAAGTTTATAGCTTCATTGGAAGTATTTTTGATCCAGACACAAAAGGCCATGTCCAGAAGCTCAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTGATGAAAAATCTCACTCTCAACTTGTCTGGTCCTGATTTTGTGTCCGTTAGGAATGCCATTTCATCACACGATGGCAACACGGAATTACGGCAGGAATTGATGTCAAGAAATAGACAAACGATGTATCATGTCAAACAGCTCAACAAACGTTAA 819 0.4151 MNGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPFPASLAYVSSTWDENFLPMNSGSSRSLPHQDELTNFHGDEADIGSKGVTIIGNSCVSNVGNSTRKLSATEMPKQGKQTQVLHGLPDFAEVYSFIGSIFDPDTKGHVQKLKEMDPINFETVLLLMKNLTLNLSGPDFVSVRNAISSHDGNTELRQELMSRNRQTMYHVKQLNKR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02319 272 Pfam Myb-like DNA-binding domain 18 63 IPR001005 -
Viun1g02319 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 67 IPR017930 -
Viun1g02319 272 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 65 IPR006447 GO:0003677
Viun1g02319 272 ProSiteProfiles Myb-like domain profile. 13 63 IPR001005 -
Viun1g02319 272 PANTHER SWI/SNF COMPLEX-RELATED 6 241 - -
Viun1g02319 272 MobiDBLite consensus disorder prediction 1 22 - -
Viun1g02319 272 Gene3D - 21 68 - -
Viun1g02319 272 ProSiteProfiles SANT domain profile. 16 69 IPR017884 -
Viun1g02319 272 SUPERFAMILY Homeodomain-like 12 68 IPR009057 -
Viun1g02319 272 CDD SANT 20 63 IPR001005 -
Viun1g02319 272 FunFam protein REVEILLE 6 isoform X1 20 68 - -
Viun1g02319 272 SMART sant 17 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02319 Viun-Chr1 33866681 33869415 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun1g02319 Myb_DNA-binding 9.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02319 - - gmx:100807156 403.675