Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02288 ATGGGGAGGGGAGGCCAAGATTATGGGAAACCGGAGAACACGAGTTCCGAGGCTTCGGATCGTGAAATCTTCAAGGCATGGGCGAAGGACGTGTCTGAGTGCGAGGAGCACTTTAAGGTGAATGTGAAAGTGGGGTTGAATCAGGAGGAGGTCGAGAATCGGCAAAAGATCTATGGATTGAACGAGTTGGAGAAGCACGACGGCCAATCGATATGGAGTCTGATTCTGGAGCAGTTCAACGACACGCTGGTTCGGATTCTCCTCGCCGCCGCAATAATTTCCTTCGTGCTCGCTTGGTACGACGGAGACGAAGGCGGTGAGATGGAGATAACTGCGTTCGTTGAGCCTCTGGTGATATTCCTGATACTAATCGTGAACGCGATTGTTGGCGTGTGGCAGGAGAGCAATGCAGAGAAGGCGCTTGATGCGCTGAAAGAGATTCAGTCGGAGCACGCGGTGGTTATTCGAGAGGGCACGAAAATCCCCAGTTTGCCCGCGAAGGAGCTCGTCCCTGGCGACATCGTGGAGCTCAAGGTTGGCGATAAGGTGCCTGCAGATATGCGCGTTGTGGAATTGATCAGTTCCACTTTGCGGTTGGAGCAGGGCTCTCTGACTGGAGAAAGTGAGGCGGTGAATAAGATCAACAGACGTGTGGAGGAGGATGCTGATATCCAGGGGAAGAGATGTATGGTTTTCGCGGGGACCACTGTTGTTAACGGGCATTGCTTTTGCTTGGTCACTCAGACTGGCATGGACACGGAAATTGGGAAGGTGCATACGCAGATACATGTGGCGTCGCAGAGCGAGGAAGATACCCCGTTGAAGAAGAAGCTCAACGAGTTTGGAGAGAACCTAACCATGATAATTGGACTTATATGTATTTTGGTTTGGCTCATCAATGTTAAGTACTTCCTTTCATGGGAGTACGTGGATGGCTGGCCCAGGAATTTCAAGTTTTCATTTGAAAAGTGTACCTATTACTTTGAGATTGCTGTGGCGCTGGCTGTGGCTGCTATTCCAGAAGGTTTGCCGGCTGTCATCACCACTTGCCTGGCTCTTGGTACTCGCAAGATGGCCCAGAAGAACGCCCTGGTTCGGAAGCTACCGAGCGTGGAGACTCTGGGTTGTACCACTGTTATTTGTTCAGATAAAACTGGCACACTGACTACCAATCAAATGGCTGTGTCGAAATTAATCGCAATTGGCCATAATGTGGACACACTTCGTGCCTTCAAGGTTGAAGGAACTACGTATAATCCAGCTGATGGTCAAATTGAGAACTGGCCGACCGAAGGATTGGATGCCAATCTTCAGACGATTGCGAAAATATCTGCTATCTGTAATGATGCTGGAGTCGCACAATCAGAGCATAAGTTCGTCGCCCATGGAATGCCTACTGAAGCAGCTTTAAAGGTTTTGGTAGAGAAGATGGGCCATCCTGAAGGATCCAAGGTTACGCAGTCGGCAAGCACAAGTACCTTGCTGCGTTGTTGTGAATGGTGGAATGAGCATGACCGACGGCTTGCTACTCTTGAGTTTGACCGTGACAGGAAGTCAATGGGCGTCATTGTGGACTCTGGTCTAGGAAAAAGGTCGCTTCTAGTTAAGGGTGCTGTGGAAAACGTGTTAGACAGAAGCACTAAAATTCAGTTGCGAGATGGTTCTGTAGTGAACCTGGATGATAATGCTAAGAACCTTGTATTGCAAGCACTTCATGAAATGTCAACTAGCGCATTGCGCTGTTTGGGATTTGCTTACAAGGATGAGCTCCCCAAATTTGAAAACTACAGTGGTAGTGACGATCATCCAGCACACCAGCTTTTGCTTGATCCTTCCAATTATTCATCAATTGAAAATGAACTTATTTTTGTTGGCTTGGTTGGATTGAGGGTAAGACCCCCTAGGGAGGAAGTATACCAAGCAATTGAAGACTGCCGAGAAGCTGGAATCCGTGTTATGGTTATAACTGGGGACAACAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTTCCCCTAATGAAGACATTACATCTAAAAGTTTGACGGGTAAAGATTTTATGGAATTGCGTGATAAAAAGGCATATTTGAACCAGAGTGGCGGCCTTTTGTTTTCAAGGGCTGAACCTAGGCACAAGCAAGAAATTGTGAGGCTGCTCAAAGAGGAAGGAGAGGTGGTGGCCATGACAGGGGATGGTGTTAATGATGCACCTGCCTTGAAGCTTGCAGACATTGGTGTTGCAATGGGCATTGCAGGGACTGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTGGCGGATGATAATTTTAGTTCAATTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAACATGAAGGCTTTCATAAGGTATATGATCTCTTCAAATATTGGCGAGGTTGCTTCAATATTTTTAACAGCTGCTCTAGGTATTCCTGAAGGATTAATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGACGGACCCCCTGCAACAGCTCTAGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCGTAGTGATGACTCGTTAATTAATTTGTGGATTTTATTCCGCTATATGGTTATTGGGATTTATGTTGGATTAGCTACAGTTGGTGTCTTCATCATATGGTATACACACGGTTCTTTCTTGGGTATTGACCTCAGTGAAGATGGACATACTCTTGTCACTTATACTCAACTTGCCAACTGGGATCAATGCTCCTCATGGAAGAACTTCACTGCTTCTCCATTCACTGCTGGTGCTAAAACAATCACGTTTGACAACCCCTGTGATTACTTTCACACTGGTAAAGTGAAGGCTATGACATTGTCCCTTTCTGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTATCTGAAGATGGAAGCCTTTTGTCAATGCCCCCTTGGGTCAACCCTTGGCTTCTTCTAGCAATGTCAGTATCATTTGGTCTGCACTTTTTGATATTGTACGTGCCATTCTTGGCACAAGTATTTGGTATCGTGCCCCTGAGCTTGAACGAGTGGTTTTTGGTTTTGGCTGTTGCACTGCCTGTCATTCTGATTGACGAGGTTCTGAAATTTGTGGGGAGATGTACAAGTGGGCGTCGACCATCAGCTGCAAGAAAACCAAAGCAAAAATCAGAGTAG 3189 0.4657 MGRGGQDYGKPENTSSEASDREIFKAWAKDVSECEEHFKVNVKVGLNQEEVENRQKIYGLNELEKHDGQSIWSLILEQFNDTLVRILLAAAIISFVLAWYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALDALKEIQSEHAVVIREGTKIPSLPAKELVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKINRRVEEDADIQGKRCMVFAGTTVVNGHCFCLVTQTGMDTEIGKVHTQIHVASQSEEDTPLKKKLNEFGENLTMIIGLICILVWLINVKYFLSWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLIAIGHNVDTLRAFKVEGTTYNPADGQIENWPTEGLDANLQTIAKISAICNDAGVAQSEHKFVAHGMPTEAALKVLVEKMGHPEGSKVTQSASTSTLLRCCEWWNEHDRRLATLEFDRDRKSMGVIVDSGLGKRSLLVKGAVENVLDRSTKIQLRDGSVVNLDDNAKNLVLQALHEMSTSALRCLGFAYKDELPKFENYSGSDDHPAHQLLLDPSNYSSIENELIFVGLVGLRVRPPREEVYQAIEDCREAGIRVMVITGDNKNTAEAICREIGVFSPNEDITSKSLTGKDFMELRDKKAYLNQSGGLLFSRAEPRHKQEIVRLLKEEGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFSSIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYMVIGIYVGLATVGVFIIWYTHGSFLGIDLSEDGHTLVTYTQLANWDQCSSWKNFTASPFTAGAKTITFDNPCDYFHTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLSMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSLNEWFLVLAVALPVILIDEVLKFVGRCTSGRRPSAARKPKQKSE 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02288 1062 Gene3D - 45 265 - -
Viun1g02288 1062 Gene3D - 378 777 IPR023214 -
Viun1g02288 1062 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Viun1g02288 1062 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 391 632 - -
Viun1g02288 1062 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Viun1g02288 1062 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1045 IPR023298 -
Viun1g02288 1062 FunFam Calcium-transporting ATPase, putative 127 263 - -
Viun1g02288 1062 Gene3D - 391 633 IPR023299 GO:0000166
Viun1g02288 1062 SFLD Haloacid Dehalogenase 362 784 - -
Viun1g02288 1062 Pfam haloacid dehalogenase-like hydrolase 378 746 - -
Viun1g02288 1062 SUPERFAMILY Calcium ATPase, transduction domain A 150 260 IPR008250 -
Viun1g02288 1062 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Viun1g02288 1062 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1051 - -
Viun1g02288 1062 SUPERFAMILY HAD-like 379 836 IPR036412 -
Viun1g02288 1062 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Viun1g02288 1062 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Viun1g02288 1062 PRINTS P-type cation-transporting ATPase superfamily signature 648 658 - -
Viun1g02288 1062 PRINTS P-type cation-transporting ATPase superfamily signature 756 768 - -
Viun1g02288 1062 PRINTS P-type cation-transporting ATPase superfamily signature 732 751 - -
Viun1g02288 1062 Gene3D - 77 1044 - -
Viun1g02288 1062 FunFam Calcium-transporting P-type ATPase, putative 630 777 - -
Viun1g02288 1062 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 252 409 - -
Viun1g02288 1062 Pfam E1-E2 ATPase 147 361 - -
Viun1g02288 1062 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 796 1049 - -
Viun1g02288 1062 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Viun1g02288 1062 Pfam Cation transporting ATPase, C-terminus 817 1042 IPR006068 -
Viun1g02288 1062 SFLD p-type atpase 362 784 IPR044492 -
Viun1g02288 1062 NCBIfam HAD-IC family P-type ATPase 706 813 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun1g02288 1062 NCBIfam HAD-IC family P-type ATPase 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun1g02288 1062 NCBIfam HAD-IC family P-type ATPase 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02288 Viun-Chr1 33733084 33739250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02288 1 1062 Primary Pumps ATPases(2) AT1G07670 79.531 0.0 1732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02288 K01537 - gmx:100788807 1978.37