Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02273 ATGGTAGCGCTGAAGAGACAACGTGGTAGCGAAGGATCTGAGAGCTTAGATTTGGCAAAGTGTCTTATGCTGTTCTCTTGTCCCCAAGAAAGTAACAAGGCAGAAGAGAAAGGTTTTGGATCTCTGGAATTTGAGTGCAAGACGTGCAACCGGAAGTTCTCATCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAAGTTGAAGGGGAAGAACTGAAAGAACAGGGAAAAAGTCTTAGCTTGTGGAGCAAACCCAAAATGCACGAGTGTTCCATCTGTGGCCAGGAATTCTCTCTGGGGCAGGCTCTGGGAGGACACATGAGAAAACACAGAGGGATCACCAACGAAGCCTTTGTTCCTATTCCTTCTATCGACCAAGTTATTGCGAAATTCCCAGTTCTCAAAAGATCCAACAGCACCAGGGTTATGTGCTTGGACTTGGAGTTACACCTGTAG 468 0.4744 MVALKRQRGSEGSESLDLAKCLMLFSCPQESNKAEEKGFGSLEFECKTCNRKFSSFQALGGHRASHKRQKVEGEELKEQGKSLSLWSKPKMHECSICGQEFSLGQALGGHMRKHRGITNEAFVPIPSIDQVIAKFPVLKRSNSTRVMCLDLELHL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02273 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Viun1g02273 155 Coils Coil 148 155 - -
Viun1g02273 155 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Viun1g02273 155 SMART c2h2final6 92 114 IPR013087 -
Viun1g02273 155 SMART c2h2final6 44 66 IPR013087 -
Viun1g02273 155 PANTHER ZINC FINGER PROTEIN ZAT5 10 153 - -
Viun1g02273 155 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Viun1g02273 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Viun1g02273 155 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Viun1g02273 155 Pfam C2H2-type zinc finger 44 69 - -
Viun1g02273 155 Pfam C2H2-type zinc finger 92 116 - -
Viun1g02273 155 Gene3D Classic Zinc Finger 42 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02273 Viun-Chr1 33580899 33581620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02273 4 153 C2H2 Transcription Factor Family AT2G37430 43.558 1.70e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g02273 zf-C2H2_6 1.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02273 - - pvu:PHAVU_001G170800g 295.819